Table 3.
Analysis of the effect of fatty acid metabolism gene mutations on clustering of lineage 2
| Gene | Position | Type | Reference | Variant | P Value | OR (95% CI) |
|---|---|---|---|---|---|---|
| fadD34 | 37,305 | snp | C | G | 0.685 | 1.68(0.137–20.594) |
| fadD34 | 37,334 | snp | A | T | 0.039 | 0.172(0.033–0.914) |
| fadD34 | 37,971 | snp | G | C | 0.999 | |
| fadD34 | 38,199 | snp | C | T | 0.849 | 1.302(0.086–19.663) |
| gca | 136,605 | snp | G | C | 0.004 | 22.789(2.669-194.569) |
| lipC | 262,829 | snp | C | T | 1.000 | 0.000 |
| clpB | 460,413 | snp | C | T | 1.000 | 0.000 |
| fgd1 | 491,556 | snp | G | A | 0.294 | 1.682(0.637–4.441) |
| fgd1 | 491,742 | snp | T | C | 0.999 | 0.000 |
| pepC | 893,733 | snp | T | G | 0.034 | 0.172(0.034–0.875) |
| far | 951,702 | snp | C | T | 0.018 | 0.296(0.108–0.812) |
| ercc3 | 958,607 | snp | G | A | 0.394 | 1.347(0.68–2.668) |
| fadH | 1,306,259 | snp | A | G | 0.719 | 0.643(0.058–7.15) |
| fadH | 1,307,598 | snp | C | G | 0.999 | 0.000 |
| ogt | 1,477,346 | snp | C | G | 0.007 | 3.952(1.453–10.749) |
| ogt | 1,477,522 | snp | C | A | 0.379 | 0.309(0.023–4.223) |
| ogt | 1,477,596 | snp | C | T | 1.000 | |
| lipI | 1,576,481 | snp | T | G | 0.998 | |
| lipI | 1,576,527 | snp | G | T | 0.939 | 1.066(0.206–5.518) |
| inhA | 1,674,210 | snp | A | C | 0.001 | 0.296(0.146–0.599) |
| fadD11 | 1,754,459 | snp | G | A | 1.000 | |
| lgt | 1,814,428 | snp | G | A | 0.999 | 0.000 |
| rpsA | 1,834,177 | snp | A | C | 0.998 | 0.000 |
| rpsA | 1,834,776 | snp | C | T | 0.022 | 3.636(1.204–10.982) |
| tlyA | 1,917,972 | snp | A | G | 0.999 | 0.000 |
| lipJ | 2,147,022 | snp | A | C | 0.876 | 1.139(0.222–5.856) |
| helZ | 2,361,604 | snp | C | G | 0.999 | 0.000 |
| helZ | 2,362,041 | snp | C | A | 0.999 | |
| fadD15 | 2,449,629 | snp | G | A | 0.952 | 1.025(0.458–2.293) |
| acpS | 2,839,689 | snp | C | T | 0.091 | 0.754(0.544–1.046) |
| fas | 2,841,022 | snp | A | G | 0.777 | 1.468(0.103–20.877) |
| fas | 2,847,281 | snp | A | G | 0.293 | 4.527(0.272–75.447) |
| relA | 2,908,252 | snp | G | A | 0.736 | 1.181(0.449–3.107) |
| arsA | 3,001,498 | snp | C | G | 0.003 | 0.447(0.262–0.764) |
| arsA | 3,001,785 | snp | G | A | 0.142 | 0.593(0.295–1.192) |
| mtr | 3,165,636 | snp | G | A | 0.491 | 0.57(0.115–2.824) |
| tesA | 3,242,617 | snp | C | T | 0.800 | 1.113(0.485–2.556) |
| cstA | 3,428,183 | snp | G | A | 0.399 | 0.861(0.608–1.219) |
| cstA | 3,428,917 | snp | C | A | 0.999 | 0.000 |
| agpS | 3,476,350 | snp | G | A | 0.921 | 1.15(0.072–18.234) |
| nudC | 3,571,828 | snp | G | C | 0.998 | 0.000 |
| sdhD | 3,704,770 | snp | A | G | 0.135 | 6.658(0.554–79.965) |
| lipF | 3,906,311 | snp | G | A | 0.806 | 1.28(0.179–9.147) |
| acs | 4,108,495 | snp | G | A | 0.531 | 1.192(0.688–2.063) |
| acs | 4,109,342 | snp | G | A | 0.601 | 0.906(0.626–1.311) |
| crp | 4,116,610 | snp | G | A | 0.239 | 2.687(0.518–13.952) |
OR, Odds ratio; CI, confidence interval
-means there is no result in statistical software or the result was too large and nonsense