Table 3.

The results of logistic regression analysis of all variations using the features common to both TM and non-TM regions

	All features (excluding position-specific phylogenetic features)		SIFT onlya		Position-specific phylogenetic features only		All features
	Disease	Neutral	Disease	Neutral	Disease	Neutral	Disease	Neutral
Correct classification	221	167	257	173	247	217	249	219
Wrong classification	62	77	26	71	36	27	34	25
Total number of errors	139 (26.38%)		97 (18.41%)		63 (11.95%)		59 (11.20%)

Here, phylogenetic features refer to SIFT score, normalized site entropy and change in residue frequency.

^aThe classification obtained by logistic regression analysis using only the SIFT score as the determining feature.