Table 6.
The results of logistic regression analysis of variations in non-TM regions
| All features excluding position-specific phylogenetic features | SIFT only | Position-specific phylogenetic features only | All features | |||||
|---|---|---|---|---|---|---|---|---|
| Disease | Neutral | Disease | Neutral | Disease | Neutral | Disease | Neutral | |
| Correct classification | 77 | 117 | 100 | 114 | 93 | 142 | 94 | 143 |
| Wrong classification | 42 | 38 | 19 | 41 | 26 | 13 | 25 | 12 |
| Total number of errors | 80 (29.20%) | 60 (21.90%) | 39 (14.23%) | 37 (13.50%) | ||||
Here, phylogenetic features refer to SIFT score, normalized site entropy and change in residue frequency.