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. 2023 Dec 1;12:RP84355. doi: 10.7554/eLife.84355

Appendix 1—key resources table.

Reagent type (species) or resource Designation Source or reference Identifiers Additional information
Strain, strain background (C. elegans) DQM335 Medwig-Kinney et al., 2020 egl-43(bmd88[egl-43p::EGL-43::loxP::GFP::EGL-43]) II; qyIs225[cdh-3p::mCherry::moeABD] V; qyIs7[laminin::GFP] X.
Strain, strain background (C. elegans) DQM350 Medwig-Kinney et al., 2020 hlh-2(bmd90[hlh-2p::loxP::GFP::HLH-2]) I; qyIs225[cdh-3p::mCherry::moeABD] V; qyIs7[laminin::GFP] X.
Strain, strain background (C. elegans) DQM354 This paper nhr-67(syb509[nhr-67p::NHR-67::GFP]) IV; bmd66[loxP::egl-43p::GFP-nanobody::P2A::HIS-58::mCherry] I; qyIs225[cdh-3p::mCherry::moeABD] V; qyIs7[laminin::GFP] X.
Strain, strain background (C. elegans) DQM368 Medwig-Kinney et al., 2020 nhr-67(syb509[nhr-67p::NHR-67::GFP]) IV; qyIs225[cdh-3p::mCherry::moeABD] V; qyIs7[laminin::GFP] X.
Strain, strain background (C. elegans) DQM444 Medwig-Kinney et al., 2020 bmd121[hsp::NHR-67::2x-BFP] I; qyIs227[cdh-3p::mCherry::moeABD] I; qyIs7[laminin::GFP] X.
Strain, strain background (C. elegans) DQM515 Medwig-Kinney et al., 2020 fos-1(bmd138[fos-1p::loxP::GFP::FOS-1]) V; qyIs227[cdh-3p::mCherry::moeABD] I; qyIs7[laminin::GFP] X.
Strain, strain background (C. elegans) DQM704 Medwig-Kinney et al., 2021 nhr-67(bmd212[nhr-67p::NHR-67::TagRFP-T::AID]) IV; hlh-2(bmd90[hlh-2p::LoxP::GFP::HLH-2]) I.
Strain, strain background (C. elegans) DQM800 This paper pop-1(he335[pop-1p::eGFP::loxP::POP-1]) I; syIs187[pes-10::7XTCF-mCherry-let-858(3’UTR)+unc-119(+)].
Strain, strain background (C. elegans) DQM811 This paper qyIs227[cdh-3p::mCherry::moeABD] I; lam-2(qy20[lam-2p::LAM-2::mNeonGreen]) X; lag-2(bmd202[lag-2p::LAG-2::P2A::H2B::mTurquoise2^lox511^ 2xHA]) V.
Strain, strain background (C. elegans) DQM853 This paper hlh-2(bmd90[hlh-2p::loxP::GFP::HLH-2]) I; stIs11476[nhr-67p::NHR-67::H1-wCherry+unc-119(+)].
Strain, strain background (C. elegans) DQM957 This paper csh128[rpl-28p::TIR1::T2A::mCherry::his-11] II; qyIs225[cdh-3p:: mCherry::moeABD] V; qyIs7[laminin::GFP] X.
Strain, strain background (C. elegans) DQM958 This paper csh140[rpl-28p::TIR1(F79G)::T2A::mCherry::his-11] II; qyIs225[cdh-3p:: mCherry::moeABD] V; qyIs7[laminin::GFP] X.
Strain, strain background (C. elegans) DQM971 This paper pop-1(he335[pop-1p::eGFP::loxP::POP-1]) I; qyIs225[cdh-3p::mCherry::moeABD] V; qyIs7[laminin::GFP] X.
Strain, strain background (C. elegans) DQM989 This paper unc-37(devKi218[unc-37p::mNeonGreen::UNC-37]) I; qyIs225[cdh-3p::mCherry::moeABD] V; qyIs7[laminin::GFP] X.
Strain, strain background (C. elegans) DQM990 This paper unc-37(e262wd26) I; qyIs225[cdh-3p::mCherry::moeABD] V; qyIs7[laminin::GFP] X.
Strain, strain background (C. elegans) DQM1003 This paper nhr-67(syb509[nhr-67p::NHR-67::GFP]) IV; bmd168[rps-27p::DHB::2x-mKate2] II.
Strain, strain background (C. elegans) DQM1006 This paper LSY-22(bmd275[lsy-22p::loxP::mNeonGreen::AID::LSY-22]) I; qyIs225[cdh-3p::mCherry::moeABD] V; qyIs7[laminin::GFP] X.
Strain, strain background (C. elegans) DQM1008 This paper pop-1(he335[pop-1p::eGFP::loxP::POP-1]) I; bmd277[loxP::egl-43p::GFP-nanobody::P2A::HIS-58::mCherry] I; qyIs225[cdh-3p::mCherry::moeABD] V; qyIs7[laminin::GFP] X.
Strain, strain background (C. elegans) DQM1009 This paper unc-37(devKi218[unc-37p::mNeonGreen::UNC-37]) I; nhr-67(wy1633[nhr-67p::NHR-67::mScarlet-I::AID*::3xFLAG]) IV.
Strain, strain background (C. elegans) DQM1010 This paper hpl-2(ot860[hpl-2p::HPL-2::mKate2::HPL-2]) III; nhr-67(syb509[nhr-67p::NHR-67::GFP]) IV.
Strain, strain background (C. elegans) DQM1011 This paper hpl-1(ot841[hpl-1p::HPL-1::mKate2::HPL-1]) X; nhr-67(syb509[nhr-67p::NHR-67::GFP]) IV.
Strain, strain background (C. elegans) DQM1012 This paper LSY-22(bmd214[lsy-22p::lox2272::TagRFP-T::AID::LSY-22]) I; nhr-67(syb509[nhr-67p::NHR-67::GFP]) IV.
Strain, strain background (C. elegans) DQM1013 This paper pop-1(he335[pop-1p::eGFP::loxP::POP-1]) I; nhr-67(syb509[nhr-67p::NHR-67::GFP]) IV.
Strain, strain background (C. elegans) DQM1014 This paper unc-37(wd17wd22)/hT2[bli-4(e937) let-?(q782) qIs48] (I, III); qyIs225[cdh-3p::mCherry::moeABD] V; qyIs7[laminin::GFP] X.
Strain, strain background (C. elegans) DQM1017 This paper ama-1(ers49[ama-1p::AMA-1::AID::GFP]) IV; nhr-67(wy1633[nhr-67p::NHR-67::mScarlet-I::AID*::3xFLAG]) IV.
Strain, strain background (C. elegans) DQM1051 This paper lin-12(ljf31[lin-12::mNeonGreen[C1]^loxP^3xFlag]) III; lag-2(bmd202[lag-2p::LAG-2::P2A::H2B::mTurquoise2^lox511^ 2xHA]) V.
Strain, strain background (C. elegans) DQM1081 This paper bmd168[rps-27p::DHB::2x-mKate2] II; egl-13(devKi199[egl-13p::EGL-13::mNeonGreen]) X; lag-2(bmd202[lag-2p::LAG-2::P2A::H2B::mTurquoise2]) V.
Strain, strain background (C. elegans) DQM1101 This paper lsy-22(bmd275[lsy-22p::^loxP^mNeonGreen::AID::LSY-22]) I; csh128[rpl-28p::TIR1::P2A::mCherry::his-11] II; qyIs225[cdh-3p:: mCherry::moeABD] V; qyIs7[laminin::GFP] X.
Strain, strain background (C. elegans) DQM1115 This paper unc-37(miz36[unc-37p::UNC-37::AID::BFP]) I; csh128[rpl-28p::TIR1::P2A::mCherry::his-11] II; qyIs225[cdh-3p:: mCherry::moeABD] V; qyIs7[laminin::GFP] X.
Strain, strain background (C. elegans) DQM1127 This paper nhr-67(syb509[nhr-67p::NHR-67::GFP]) IV; stIs11476[nhr-67p::NHR-67::H1-wCherry+unc-119(+)].
Strain, strain background (C. elegans) DQM1129 This paper bmd143[hsp::HLH-2::2xBFP] I; nhr-67(syb509[nhr-67p::NHR-67::GFP]) IV.
Strain, strain background (C. elegans) DQM1135 This paper qyIs227[cdh-3p::mCherry::moeABD] I; lam-2(qy20[lam-2p::LAM-2::mNeonGreen]) X; lag-2(bmd202[lag-2p::LAG-2::P2A::H2B::mTurquoise2^lox511^ 2xHA]) V; lag-1(devKi208[lag-1::mNeonGreen]) IV.
Strain, strain background (C. elegans) JK3791 Phillips et al., 2007 qIs95[sys-1p::Venus::SYS-1+pttx-3::DsRed]
Strain, strain background (C. elegans) NK1034 Matus et al., 2015 qyIs225[cdh-3p::mCherry::moeABD] V; qyIs7[laminin::GFP] X.
Strain, strain background (C. elegans) PHX509 Medwig-Kinney et al., 2020 nhr-67(syb509[nhr-67p::NHR-67::GFP]) IV.
Strain, strain background (C. elegans) PS5332 Green et al., 2008 syIs187[pes-10::7XTCF-mCherry-let-858(3’UTR)+unc-119(+)]
Strain, strain background (C. elegans) RW11476 Gerstein et al., 2010 unc-119(tm4063) III; stIs11476[nhr-67::H1-wCherry+unc-119(+)].
Strain, strain background (C. elegans) SV2114 van der Horst et al., 2019 pop-1(he335[eGFP::loxP::pop-1]) I.
Strain, strain background (C. elegans) TV27467 This paper nhr-67(wy1632[nhr-67p::NHR-67::mNeonGreen::AID*::3xFLAG]) IV.
Strain, strain background (C. elegans) TV27468 This paper nhr-67(wy1633[nhr-67p::NHR-67::mScarlet-I::AID*::3xFLAG]) IV.
Recombinant DNA reagent Plasmid: pTNM087 This paper LSY-22 sgRNA plasmid (AAACGAAGTGGATCAGCCAG)
Recombinant DNA reagent Plasmid: pTNM088 This paper LSY-22^SEC^TagRFP-T::AID repair plasmid
Recombinant DNA reagent Plasmid: pTNM140 This paper LSY-22^SEC^mNeonGreen::AID repair plasmid
Chemical compound, drug 1-Naphthaleneacetic acid, potassium salt (K-NAA) PhytoTech Labs N610
Chemical compound, drug Hygromycin B Omega Scientific, Inc. HG-80
Chemical compound, drug Levamisole hydrochloride Sigma-Aldrich 31742
Chemical compound, drug Sodium azide Sigma-Aldrich S2002
Software, algorithm Adobe Illustrator Adobe Version 26.0.2
Software, algorithm Alpha Fold Jumper et al., 2021; Varadi et al., 2022 Version 2
Software, algorithm ApE – A Plasmid Editor Wayne Davis Version 2.0.61
Software, algorithm Fiji/ImageJ Schindelin et al., 2012 Version 2.0.0-rc-69/1.53e
Software, algorithm ggplot2 Tidyverse Version 3.3.5
Software, algorithm Exon-Intron Graphic Maker Nikhil Bhatla Version 4
Software, algorithm JACoP (Just Another Colocalization Plugin) Bolte and Cordelières, 2006 Version 2.1.1
Software, algorithm Metamorph Molecular Devices Version 7.10.3.279
Software, algorithm Rstudio R Version 1.4.1717