Table 1.
Basic properties of the VuRNAi gene families in cowpea.
| Gene properties | Protein properties | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| Serial # | Gene name | Accession ID | Chromosomal location | ORF length (bp) | Gene length (bp) | Number of intron | Molecular weight (KD) | Protein length (aa) | pI |
| VuDCL | |||||||||
| 1 | VuDCL1 | Vigun09g003800.1 | Vu09:275033-288198 | 5877 | 13165 | 19 | 219.49 | 1959 | 6.28 |
| 2 | VuDCL2a | Vigun06g122700.1 | Vu06:25020658-25032899 | 2388 | 12241 | 8 | 90.85 | 796 | 7.02 |
| 3 | VuDCL2b | Vigun06g139200.1 | Vu06:26462778-26478925 | 4167 | 16147 | 21 | 157.20 | 1389 | 7.05 |
| 4 | VuDCL2c | Vigun06g138900.1 | Vu06:26440174-26448634 | 3654 | 8460 | 20 | 138.26 | 1218 | 6.88 |
| 5 | VuDCL2d | Vigun05g132600.1 | Vu05:15578574-15589149 | 4254 | 10575 | 22 | 160.38 | 1418 | 6.77 |
| 6 | VuDCL3 | Vigun09g219100.1 | Vu09:39292521-39317350 | 5001 | 24829 | 24 | 187.79 | 1667 | 7.06 |
| 7 | VuDCL4 | Vigun03g367100.1 | Vu03:57043142-57063002 | 4899 | 19860 | 24 | 184.29 | 1633 | 5.87 |
|
| |||||||||
| VuAGO | |||||||||
| 1 | VuAGO1 | Vigun04g040700.1 | Vu04:3512565-3519416 | 3189 | 6851 | 20 | 117.27 | 1063 | 9.38 |
| 2 | VuAGO3a | Vigun06g143400.1 | Vu06:26898561-26903499 | 3117 | 4938 | 2 | 117.03 | 1039 | 9.01 |
| 3 | VuAGO3b | Vigun03g198800.1 | Vu03:28537393-28540930 | 2913 | 3537 | 2 | 109.05 | 971 | 9.03 |
| 4 | VuAGO4a | Vigun06g025400.1 | Vu06:11767096-11775775 | 2748 | 8679 | 21 | 102.40 | 916 | 8.80 |
| 5 | VuAGO4b | Vigun08g178900.1 | Vu08:34878837-34886097 | 2709 | 7260 | 21 | 100.81 | 903 | 9.14 |
| 6 | VuAGO5a | Vigun11g132800.1 | Vu11:34148188-34154497 | 2964 | 6309 | 21 | 109.30 | 988 | 9.66 |
| 7 | VuAGO5b | Vigun11g133000.1 | Vu11:34188493-34194747 | 2964 | 6254 | 21 | 109.13 | 988 | 9.66 |
| 8 | VuAGO6 | Vigun11g043400.1 | Vu11:6379474-6395631 | 2679 | 16157 | 2 | 100.04 | 893 | 8.76 |
| 9 | VuAGO7a | Vigun02g055700.1 | Vu02:19910434-19915778 | 2967 | 5344 | 2 | 112.57 | 989 | 9.28 |
| 10 | VuAGO7b | Vigun02g055800.1 | Vu02:19950731-19954473 | 2730 | 3742 | 1 | 103.24 | 910 | 9.25 |
| 11 | VuAGO10a | Vigun07g003200.1 | Vu07:253781-261378 | 2919 | 7597 | 20 | 108.95 | 973 | 9.26 |
| 12 | VuAGO10b | Vigun07g233900.1 | Vu07:35574238-35582483 | 2925 | 8245 | 20 | 109.60 | 975 | 9.27 |
| 13 | VuAGO10c | Vigun09g063300.1 | Vu09:6634205-6647708 | 2727 | 13503 | 21 | 103.27 | 909 | 9.10 |
| 14 | VuAGO10d | Vigun03g350900.1 | Vu03:55202472-55215146 | 2709 | 12674 | 21 | 102.16 | 903 | 9.05 |
|
| |||||||||
| VuRDR | |||||||||
| 1 | VuRDR1a | Vigun02g017800.1 | Vu02:6314155-6322447 | 3651 | 8292 | 5 | 138.87 | 1217 | 8.58 |
| 2 | VuRDR1b | Vigun08g009200.1 | Vu08:818516-822196 | 3345 | 3680 | 4 | 126.55 | 1115 | 6.44 |
| 3 | VuRDR1c | Vigun02g017700.1 | Vu02:6301580-6310988 | 3402 | 9408 | 3 | 129.40 | 1134 | 8.28 |
| 4 | VuRDR2 | Vigun03g326600.1 | Vu03:52257972-52262538 | 3360 | 4566 | 3 | 127.39 | 1120 | 6.23 |
| 5 | VuRDR5 | Vigun04g008600.1 | Vu04:614376-620001 | 1377 | 5625 | 9 | 51.78 | 459 | 8.20 |
| 6 | VuRDR6a | Vigun01g151600.1 | Vu01:33427336-33433259 | 3618 | 5923 | 1 | 137.47 | 1206 | 7.97 |
| 7 | VuRDR6b | VigunL057500.1 | contig_465:34900-40824 | 3393 | 5924 | 1 | 128.83 | 1131 | 8.17 |