TABLE 3.
Comparison of putative ς70 consensus sequencesa
| Bacterium (G+C con- tentb [%]) | Most-common nucleotidec at position:
|
|||||||||||||||||||||||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| −45 | −44 | −43 | −42 | −41 | −40 | −39 | −38 | −37 | −36 | −35 | −34 | −33 | −32 | −31 | −30 | −29 | −28 | −27 | −26 | −25 | −24 | −23 | −22 | −21 | −20 | −19 | −18 | −17 | −16 | −15 | −14 | −13 | −12 | −11 | −10 | −9 | −8 | −7 | −6 | −5 | −4 | −3 | −2 | −1 | +1 | |
| Streptomyces (74) | T86 | T90 | G100 | A69 | C66 | T59 | A89 | T100 | ||||||||||||||||||||||||||||||||||||||
| C. glutamicum (57) | T48 | T48 | G73 | A54 | A52 | G55 | T79 | A73 | A58 | T85 | ||||||||||||||||||||||||||||||||||||
| E. coli (51) | T78 | T82 | G68 | A58 | C51 | A55 | T82 | A90 | T52 | A59 | A49 | T89 | ||||||||||||||||||||||||||||||||||
| B. subtilis (43) | A56 | A48 | T87 | T83 | G78 | A64 | C51 | A58 | T52 | T58 | G52 | T94 | A96 | T60 | A78 | A74 | T94 | A52 | A48 | |||||||||||||||||||||||||||
| C. jejuni (30) | T52 | T52 | T67 | T57 | A67 | A76 | G62 | T57 | T71 | T52 | T62 | T62 | T62 | T52 | T57 | T71 | T52 | T71 | G52 | T95 | A90 | T57 | A76 | A62 | T81 | T86 | A52 | |||||||||||||||||||
Included are sequences of 21 C. jejuni promoters (this study), 237 B. subtilis promoters (16), 33 C. glutamicum promoters (28), 29 Streptomyces promoters (35), and 263 E. coli promoters (15).
G+C content of the chromosomal DNA.
The subscript values are the frequencies of occurrence in percent. Most-common nucleotides are only given when the percentages exceed 47%.