| Chemicals, peptides, and recombinant proteins |
|
| Sardine Oil |
Peru in 2019 |
N/A |
|
cis-5,8,11,14,17-Eicosapentaenoic acid |
Sigma-Aldrich |
Cat# E2011 |
|
cis-4,7,10,13,16,19-Docosahexaenoic acid |
Sigma-Aldrich |
Cat# D2534 |
| Isopropanol, Optima LC/MS grade |
Fisher Scientific |
Cat# A461-4 |
| Methanol, Optima LC-MS grade |
Fisher Scientific |
Cat# A955-500 |
| Acetonitrile, Optima LC-MS grade |
Fisher Scientific |
Cat# A955-500 |
| Ethanol, HPLC grade |
Fisher Scientific |
Cat# AC611050040 |
| Water, Optima LC-MS grade |
Fisher Scientific |
Cat# W6500 |
|
Tert-Butyl Methyl Ether, HPLC Plus grade |
Sigma Aldrich |
Cat# 650560 |
| Ammonium formate |
Alfa Aeser |
Cat# 540-69-2 |
| Butylated hydroxytoluene |
Sigma Aldrich |
Cat# B1378-100G |
| Acetic Acid, Optima LC/MS grad |
Fisher Scientific |
Cat# A11350 |
| Phosphatidylcholine (23:0/23:0) |
Avanti Polar Lipids |
Cat# 850372 |
| Phosphatidylglycerol (14:0/14:0) |
Avanti Polar Lipids |
Cat# 840445 |
| Phosphatidic acid (14:0/14:0) |
Avanti Polar Lipids |
Cat# 830845 |
| Phosphatidylethanolamine (14:0/14:0) |
Avanti Polar Lipids |
Cat# 850745 |
| Phosphatidylserine (14:0/14:0) |
Avanti Polar Lipids |
Cat# 840033 |
| Sphingomyelin (18:1/12:0) |
Avanti Polar Lipids |
Cat# 860583 |
| Deuterated (d8)-Arachidonic acid |
Cayman Chemical |
Cat# 390010 |
| Triglyceride (14:1/14:1/14:1) |
NuCheck Prep |
Cat# T-205 |
| Liposome kit |
Sigma-Aldrich |
Cat# L4395-1VL |
| Oil red O |
Poly Scientific, Inc |
Cat# S-2146 |
| Hematoxylin and eosin |
Leica |
Leica |
| (5Z,8Z,11Z,14Z,17Z)-Icosa-5,8,11,14,17-pentaenoic acid |
Combi-Blocks |
Cat# QG-5508 |
| LiAlH4 |
MilliporeSigma |
Cat# 199877 |
| NaI |
MilliporeSigma |
Cat# 383112 |
| Li2CuCl4 |
MilliporeSigma |
Cat# 224308 |
| Jones reagent |
MilliporeSigma |
Cat# 758035 |
| RNeasy Mini Kit |
Qiagen |
Cat# 74004 |
| TruSeq Stranded mRNA Sample Prep Kit |
Illumina |
Cat#: 20020595 |
| Ketamine |
Akorn, Inc |
Cat# NDC42023-115-10 |
| Xylazine |
Akorn, Inc |
Cat# NDC59399-110-20 |
| 1% tropicamide ophthalmic solution |
Akorn, Inc |
Cat# NDC17478-102-12 |
|
| Deposited data |
|
| RNA-seq data |
This paper |
GEO: GSE221559
|
|
| Experimental models: Cell lines |
|
| Chinese hamster ovary (CHO) cells |
ATCC |
CCL-61 |
|
| Experimental models: Organisms/strains |
|
| Mouse: C57BL/6 |
Taconic Biosciences |
B6NTac |
| Mouse: C57BL/6J |
Jackson Laboratories |
JAX:000664 |
|
| Oligonucleotides |
|
| Cyp4a10 (Mm02601690_gH) |
Life Technologies |
Cat# 4331182 |
| Cyp4a14 (Mm00484135_m1) |
Life Technologies |
Cat# 4331182 |
| Cyp4a31 (Mm07308194_g1) |
Life Technologies |
Cat# 4351372 |
| Acot1 (Mm01622471_s1) |
Life Technologies |
Cat# 4331182 |
| Lpl (Mm00434764_m1) |
Life Technologies |
Cat# 4331182 |
| Pck1 (Mm01247058_m1) |
Life Technologies |
Cat# 4331182 |
| Pdhb (Mm00499323_m1) |
Life Technologies |
Cat# 4331182 |
| C9 (Mm00442739_m1) |
Life Technologies |
Cat# 4331182 |
| C4a (Mm01132415_g1) |
Life Technologies |
Cat# 4331182 |
| Elovl2 (Mm00517086_m1) |
Life Technologies |
Cat# 4331182 |
| Elovl5 (Mm00506717_m) |
Life Technologies |
Cat# 4331182 |
| Actb (Mm02619580_g1) |
Life Technologies |
Cat# 4331182 |
|
| Software and algorithms |
|
| NDP.view2 |
Hamamatsu Photonics |
Cat# U12388-01 |
| Optomotry VR, optomotor tests of vision |
Cerebral Mechanics Inc. |
Cat# Optomotry VR 1.7.4 |
| ERG (UTAS visual diagnostic test system) |
LKC technologies |
Cat# EM for windows version 9.4.0 |
| kallisto |
Bray et al.36
|
https://github.com/pachterlab/kallisto |
| tximport |
Soneson et al.37
|
https://bioconductor.org/packages/release/bioc/html/tximport.html |
| edgeR |
Robinson et al.38
|
https://bioconductor.org/packages/release/bioc/html/edgeR.html |
| limma |
Ritchie et al.39
|
https://bioconductor.org/packages/release/bioc/html/limma.html |
| gProfiler |
Raudvere et al.40
|
https://biit.cs.ut.ee/gprofiler/gost |
| Pathview |
Luo et al.41
|
https://bioconductor.org/packages/release/bioc/html/pathview.html |
| msigdb |
Liberzon et al.42
|
https://www.gsea-msigdb.org/gsea/msigdb |
| MGI |
Mouse Genome Database |
https://www.informatics.jax.org/ |
| tidyverse |
R packages |
https://www.tidyverse.org/ |
| MAVEN metabolomics software v. 2.0.5 |
Life Technologies |
Cat# NC2169324 |
| LIMSA add-in for Microsoft Excel |
N/A |
www.helsinki.fi/science/lipids/software.html |
| MetaboAnalyst v. 5.0 software |
N/A |
www.metaboanalyst.ca |
|
| Other |
|
| Cobas® 6000 analyzer |
Roche Diagnostics |
Cat# ROCHE Cobas 6000 |
| SuperoseTM 6 10/300 GL column |
GE Healthcare |
Cat# GE17-5172-01 |
| ÄKTA pure™ chromatography system |
GE Healthcare |
Cat# 29018224 |
| NanoDropTM spectrophotometer |
Life Technologies |
Cat# ND2000CLAPTOP |
| 4200 TapeStation System |
Agilent Technologies |
Cat# G2991BA |
| NextSeq 2000 |
Illumina |
Cat# 20038897 |
| Hamamatsu NDP scanner |
Hamamatsu Photonics |
Cat# RS |
| Nuclear Magnetic Resonance Spectroscopy (NMR) |
Agilent Technologies |
Model: Varian INOVA 400 |
| High-Resolution Mass Spectrometry (HRMS) |
Waters Corp |
Model: Xevo G2-XS QT |
| ERG instrument (Full field ERG, UTAS E 3000) |
LKC technologies |
Cat# UTAS E 3000 |
| OptoMotry |
CerebralMechanics Inc. |
Optomotry, serial number DP/N 00324H |
| Fisher Bead Mill 4 |
Fisher Scientific |
Cat# 15-340-164 |
| Ceramic beads |
Fisher Scientific |
Cat# 15-340-185 |
| Savant Speedvac SC110A |
American Laboratory Trading |
Cat# 23011 |
| Vortex Genie II |
Scientific Industries |
Cat# SI-0236 |
| Synergi HydroRP C18AQ 150 × 2 mm, 4 u, 80A LC-MS column |
Phenomenex |
Cat# 00F-4375-B0 |
| C18AQ SecurityGuard cartridge |
Phenomenex |
Cat# AJ0-7510 |
| Shimadzu Prominence HPLC |
Prodigy Scientific |
Cat# Shimadzu-Prom |
| Thermo LTQ-Orbitrap Velos mass spectrometer |
Labexchange |
Cat# 19984 |
| Eppendorf Safe-Lock 2.0 mL tubes, PCR clean |
Sigma Aldrich |
Cat# EP022363344 |
| Cat# EP022363344 |
Fisher Scientific |
Cat# 06-406-19M |
| LC-MS vial snap-caps, 11 mm |
Fisher Scientific |
Cat# 14-823-399 |
| Agilent vial inserts 250 ul |
Agilent |
Cat# 5183-2085 |
| Bleaching Clay |
Mizusawa Industrial Chemicals, Ltd. |
Cat# GALLEON EARTH V2 |
| Silica Gel |
AGC Si-Tech Co., LTD |
Cat# M.S.GEL D-75-60A |