Table 3:
The size (number of vertices and edges; in unit of million) of the cdBGs and the CPU time (in minutes) measured for the 3 modules of our bridging tool on the 10 biological RNA-seq samples.
| SRA ID | size of cdBG | CPU time (in minutes) | |||
|---|---|---|---|---|---|
| #vertices | #edges | 1 | 2 | 3 | |
| SRR307903 | 3.09M | 6.17M | 96 | 26 | 22 |
| SRR307911 | 5.24M | 10.77M | 138 | 48 | 135 |
| SRR315323 | 5.22M | 10.14M | 102 | 31 | 112 |
| SRR315334 | 3.04M | 7.27M | 124 | 46 | 45 |
| SRR387661 | 10.69M | 26.06M | 413 | 162 | 118 |
| SRR534291 | 7.83M | 21.66M | 679 | 244 | 95 |
| SRR534307 | 15.44M | 42.92M | 938 | 512 | 418 |
| SRR534319 | 10.23M | 23.22M | 298 | 81 | 97 |
| SRR545695 | 11.04M | 25.65M | 415 | 128 | 133 |
| SRR545723 | 9.51M | 19.6M | 226 | 64 | 303 |