Table 3.
Gut microbial taxa and systemic inflammation.
| Feature | Metadata | Coefficient | N | N not 0% | q-value |
|---|---|---|---|---|---|
| HIV-infected (6 weeks postpartum) | |||||
| p:Proteobacteria.c:Gammaproteobacteria.o:Burkholderiales.f:Oxalobacteraceae | CRP | −0.6080931 | 25 | 4 | 0.023359 |
| p:Firmicutes.c:Clostridia.o:Lachnospirales.f:Lachnospiraceae.g:Eubacterium_eligens_group | ICAM-1 | 0.43383237 | 25 | 3 | 0.000235 |
| HIV-uninfected (6 weeks postpartum) | |||||
| p:Firmicutes.c:Bacilli.o:Lactobacillales.f:Leuconostocaceae.g:Weissella | IL-4 | 0.9326621 | 48 | 9 | 6.04e-08 |
| HIV-infected (6 months postpartum) | |||||
| p:Firmicutes.c:Bacilli.o:Erysipelotrichales.f:Erysipelatoclostridiaceae.g:Catenibacterium | IL-2 | 1.32753279 | 23 | 9 | 0.021138 |
| p:Proteobacteria.c:Gammaproteobacteria.o:Pasteurellales.f:Pasteurellaceae.g:Haemophilus | IL-6 | 1.58409509 | 23 | 6 | 0.017096 |
| p:Firmicutes.c:Clostridia.o:Lachnospirales.f:Lachnospiraceae.g:Eubacterium_eligens_group | IL-2 | 0.55998378 | 23 | 4 | 0.001936 |
| p:Firmicutes.c:Clostridia.o:Lachnospirales.f:Lachnospiraceae.g:Eubacterium_eligens_group | IL-10 | 0.60010197 | 23 | 4 | 0.000557 |
| p:Firmicutes.c:Clostridia.o:Lachnospirales.f:Lachnospiraceae.g:Anaerostignum | IL-4 | 0.45052327 | 23 | 3 | 0.017532 |
| p:Firmicutes.c:Clostridia.o:Lachnospirales.f:Lachnospiraceae.g:Butyrivibrio | IL-6 | 0.76872521 | 23 | 3 | 4.03e-05 |
| p:Firmicutes.c:Clostridia.o:Lachnospirales.f:Lachnospiraceae.g:Butyrivibrio | TNF | 0.70911458 | 23 | 3 | 0.001431 |
| HIV-uninfected (6 months postpartum) | |||||
| p:Actinobacteriota | LBP | 0.83076488 | 42 | 42 | 0.018545 |
| p:Firmicutes | IL-2 | −0.1308627 | 42 | 42 | 0.041327 |
| p:Actinobacteriota.c:Coriobacteriia.o:Coriobacteriales.f:Coriobacteriaceae | IL-2 | 0.91371356 | 42 | 41 | 0.029222 |
| p:Firmicutes.c:Clostridia.o:Clostridia_UCG.014.f:Clostridia_UCG.014.g:Clostridia_UCG.014 | IFN-γ | −1.5113457 | 42 | 36 | 0.033319 |
| p:Actinobacteriota.c:Actinobacteria.o:Actinomycetales.f:Actinomycetaceae.g:Actinomyces | FC | 0.97433139 | 42 | 32 | 0.03262 |
| p:Firmicutes.c:Bacilli.o:Erysipelotrichales.f:Erysipelatoclostridiaceae | ICAM-1 | 2.02529785 | 42 | 27 | 0.033465 |
| p:Firmicutes.c:Bacilli.o:Erysipelotrichales.f:Erysipelotrichaceae.g:Solobacterium | ICAM-1 | 1.74957426 | 42 | 12 | 0.033465 |
| p:Actinobacteriota.c:Coriobacteriia.o:Coriobacteriales.f:Eggerthellaceae.g:Eggerthella | FC | 1.21725587 | 42 | 9 | 0.03262 |
| p:Actinobacteriota.c:Coriobacteriia.o:Coriobacteriales.f:Eggerthellaceae.g:Eggerthella | IL-2 | 1.3634006 | 42 | 9 | 0.0208 |
| p:Firmicutes.c:Bacilli.o:Lactobacillales.f:Lactobacillaceae.g:Lactobacillus | IL-8 | 1.04516168 | 42 | 9 | 0.041506 |
| p:Fusobacteriota.c:Fusobacteriia.o:Fusobacteriales.f:Fusobacteriaceae | FC | 1.30098884 | 42 | 6 | 0.001424 |
Association between gut microbial taxa and microbial translocation, and systemic and gut inflammation biomarkers. N = total number of samples used in model; N not 0% = number of samples in which microbial feature is not 0%; FC, fecal calprotectin.