Table 2.
Significant SNPs identified in multiple GWAS models (FarmCPU, Blink, MLMM, and MLM) for young fruit resistance in the cucumber core collection.
| SNP | Chr | Position (bp) 1 | p-value/PVE (percent phenotypic variation explained) (%) | |||
|---|---|---|---|---|---|---|
| FarmCPU | BLINK | MLMM | MLM | |||
| S1_21117743 | 1 | 21,117,743 | – | 5.15E-13/9.01 | – | 1.73E-8/7.74 |
| S2_10199046 | 2 | 10,199,046 | – | 8.31E-10/3.63 | – | – |
| S2_10226744 | 2 | 10,226,744 | 3.85E-5/3.60 | – | 9.76E-10/24.49 | 5.95E-9/1.44 |
| S3_18480786 | 3 | 18,480,786 | 1.06E-8/0.38 | – | – | – |
| S3_37752706 | 3 | 37,752,706 | 3.37E-11/1.53 | 4.49E-10/2.09 | – | – |
| S4_8024257 | 4 | 8,024,257 | – | 2.64E-9/2.25 | – | – |
| S5_23563699 | 5 | 23,563,699 | 1.73E-8/3.23 | – | – | – |
| S6_29086459 | 6 | 29,086,459 | 2.70E-8/2.03 | – | – | – |
| S6_29175300 | 6 | 29,175,300 | 3.31E-11/5.48 | – | – | – |
| S7_3391182 | 7 | 3,391,182 | 9.52E-9/0.79 | – | – | – |
| S7_17739386 | 7 | 17,739,386 | – | 6.04E-9/1.35 | – | – |
1Genomic locations are according to Gy14 v. 2.1 (CuGenDB v.2; http://cucurbitgenomics.org/v2/).