Table 3.
Geographical origin of accessions carrying the alternate alleles for the significant SNPs for young fruit resistance to P. capsici as identified by GWAS.
| SNP | Effect b | Region of origin a | Total | |||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Africa | Europe | East Asia | Central/West Asia | India/South Asia | North America | Turkey | Other | |||
| S1_2111743 | ↓ | – | – | – | 2 | 9 | 1 | 2 | – | 14 |
| S3_37752706 | ↓ | 7 | 28 | 82 | 13 | 24 | 13 | 30 | 0 | 197 |
| S4_8024257 | ↓ | 4 | 24 | 1 | 11 | 18 | 4 | 32 | 2 | 96 |
| S5_23563699 | ↓ | – | 1 | 1 | 1 | 26 | 3 | – | – | 32 |
| S6_29175300 | ↓ | – | 2 | 1 | – | 27 | 4 | – | – | 34 |
| S3_18480786 | – | 1 | 2 | 23 | 2 | 5 | 1 | – | – | 34 |
| S2_10226744 | ↑ | 1 | 2 | 23 | – | 2 | 2 | – | – | 30 |
| S7_3391182 | ↑ | 5 | 43 | 79 | 30 | 47 | 37 | 32 | 2 | 275 |
| S7_17739386 | ↑ | 1 | 17 | 17 | 7 | 15 | 10 | 17 | – | 84 |
The regions are as defined in Wang et al. (2018).
The effect of alternative alleles compared to reference alleles in disease score. ↓ - decreased disease score (more resistant); ↑ - increased disease score (more susceptible).