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. 2023 Nov 15;14:1281755. doi: 10.3389/fpls.2023.1281755

Table 3.

Geographical origin of accessions carrying the alternate alleles for the significant SNPs for young fruit resistance to P. capsici as identified by GWAS.

SNP Effect b Region of origin a Total
Africa Europe East Asia Central/West Asia India/South Asia North America Turkey Other
S1_2111743 ↓ – – – 2 9 1 2 – 14
S3_37752706 ↓ 7 28 82 13 24 13 30 0 197
S4_8024257 ↓ 4 24 1 11 18 4 32 2 96
S5_23563699 ↓ – 1 1 1 26 3 – – 32
S6_29175300 ↓ – 2 1 – 27 4 – – 34
S3_18480786 – 1 2 23 2 5 1 – – 34
S2_10226744 ↑ 1 2 23 – 2 2 – – 30
S7_3391182 ↑ 5 43 79 30 47 37 32 2 275
S7_17739386 ↑ 1 17 17 7 15 10 17 – 84
a

The regions are as defined in Wang et al. (2018).

b

The effect of alternative alleles compared to reference alleles in disease score. ↓ - decreased disease score (more resistant); ↑ - increased disease score (more susceptible).