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. 2023 Nov 17;14:1266990. doi: 10.3389/fgene.2023.1266990

TABLE 5.

Pairwise comparisons of different indicators.

Raw reads–10M normalize reads Raw reads–double discard reads 10M normalize reads–double discard reads Double discard–RPM Double discard–TPM In Genus Rank–Genus Rank Ratio*in Genus Rank In Genus Rank–King Genus Rank Ratio*in Genus Rank Genus Rank Ratio–Genus Rank Ratio*in Genus Rank Genus Rank Ratio–King Genus Rank Ratio*in Genus Rank King Genus Rank Ratio–Genus Rank Ratio*in Genus Rank
A. baumannii AUC 0.92 0.919 0.92 0.938 0.919 0.938 0.938 0.939 0.938 0.929 0.836 0.945 0.836 0.944 0.942 0.945 0.942 0.944 0.941 0.945
p 0.691 0.133 0.12 0.905 0.158 0.000 ** 0.000 ** 0.731 0.792 0.651
K. pneumoniae AUC 0.978 0.973 0.978 0.938 0.973 0.938 0.938 0.915 0.938 0.916 0.728 0.941 0.728 0.941 0.931 0.941 0.931 0.941 0.931 0.941
p 0.332 0.19 0.253 0.033 * 0.050 * 0.000 ** 0.000 ** 0.007 ** 0.024 * 0.037 *
S. pneumoniae AUC 0.921 0.915 0.921 0.997 0.915 0.997 0.997 0.984 0.997 0.986 0.973 0.997 0.973 0.997 0.795 0.997 0.795 0.997 0.78 0.997
p 0.161 0.002 ** 0.002 ** 0.041 * 0.076 0.001 ** 0.001 ** 0.000 ** 0.000 ** 0.000 **
S. aureus AUC 0.952 0.947 0.952 0.961 0.947 0.961 0.961 0.964 0.961 0.966 0.896 0.965 0.896 0.966 0.892 0.965 0.892 0.966 0.895 0.965
p 0.431 0.566 0.357 0.766 0.593 0.000 ** 0.000 ** 0.001 ** 0.001 ** 0.001 **
H. influenzae AUC 0.923 0.936 0.923 0.983 0.936 0.983 0.983 0.992 0.983 0.986 0.9 0.992 0.9 0.992 0.938 0.992 0.938 0.992 0.936 0.992
p 0.092 0.002 ** 0.002 ** 0.187 0.695 0.000 ** 0.000 ** 0.001 ** 0.001 ** 0.001 **
S. maltophilia AUC 0.974 0.969 0.974 0.981 0.969 0.981 0.981 0.987 0.981 0.966 0.773 0.985 0.773 0.985 0.988 0.985 0.988 0.985 0.988 0.985
p 0.115 0.092 0.026 * 0.377 0.098 0.000 ** 0.000 ** 0.273 0.291 0.414
P. aeruginosa AUC 0.974 0.968 0.974 0.984 0.968 0.984 0.984 0.943 0.984 0.945 0.758 0.962 0.758 0.955 0.937 0.962 0.937 0.955 0.928 0.962
p 0.079 0.108 0.068 0.017 * 0.015 * 0.000 ** 0.000 ** 0.001 ** 0.018 * 0.001 **
A. fumigatus AUC 0.992 0.991 0.992 0.992 0.991 0.992 0.992 0.969 0.992 0.984 0.818 0.989 0.818 0.964 0.981 0.989 0.981 0.964 0.905 0.989
p 0.53 0.473 0.146 0.003 ** 0.052 0.000 ** 0.000 ** 0.015 * 0.144 0.002 **