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. 2023 Jun 23;39(6):3031–3059. doi: 10.1007/s10565-023-09816-7

Table 1.

DESeq2 analysis outcome parameters per gene for each treatment condition (Love et al. 2014)

Parameter Description
Ctr. read counts Normalised read counts of 0.1% DMSO control samples
Treat. read counts Normalised read counts of treatment samples
baseMean Average of normalised counts taken over all samples of compared groups
log2FoldChange log2 fold change of treatment group over control group
lfcSE Standard error of the log2Fold change
stat Wald statistic
pvalue Wald test p value
padj Benjamini–Hochberg adjusted p value