Table 1.
Overlaps between nodule transcriptome responses to systemic N signaling and PEG signaling.
| Term | Transcript numbers | Proportion in PEG_DATs % | Enrichment FDR |
|---|---|---|---|
| SN2 in PEG | 3,838 | 56 | 7.63.10-90 |
| DN2 in PEG | 1,465 | 66 | 8.22.10-86 |
| (DN2 or/and SN2) in PEG | 4,277 | 57 | 1.04.10-110 |
The total number of significantly expressed nodule transcript detected in this study was 23,610. Among them, differentially accumulated transcripts in response to PEG were 10,904 (PEG_DATs). The DN2 and SN2 mature nodule transcripts, responding respectively to systemic signaling of N Deficit and N Satiety, identified by Lambert et al. (2020b) were assigned to the MtruncA17r5.0 annotation by blast (1,465 and 3,838 transcripts, respectively). Specific enrichments of these DN2 and/or SN2 transcripts in the PEG_DATs list were evaluated using hypergeometric tests relative to all accumulated transcripts of the organ as a reference. Enrichment was declared when the false discovery rate (FDR) associated with the hypergeometric test was lower than 0.05.