REAGENT or RESOURCE	SOURCE	IDENTIFIER
Deposited data
Processed single-cell RNA-seq data in human Melanoma patients	Sade-Feldman et al.5	GEO: GSE120575
Processed single-cell RNA-seq data in human TNBC patients	Zhang et al.7	GEO: GSE169246
Anti-PD1-treated breast cancer-I-SPY2	Wolf et al.51	GEO: GSE196096
Anti-PD1-treated melanoma-Hugo	Hugo et al.52	GEO: GSE78220
Anti-PD1-treated advanced melanoma-Riaz	Riaz et al.53	GEO: GSE91061
Anti-PD1, anti-PD1+anti-CTLA-4-treated melanoma- Gide	Gide et al.54	ENA: PREJEB23709
Software and algorithms
scCURE	GitHub	https://doi.org/10.5281/zenodo.8418094
Seurat-4.9.9	CRAN	https://satijalab.org/seurat/
R-4.1.2	The R Foundation	https://www.r-project.org/
Batchelor-1.6.3	Bioconductor	https://bioconductor.org/packages/release/bioc/html/batchelor.html
Monocle-2.28.0	Bioconductor	https://bioconductor.org/packages/release/bioc/html/monocle.html
MATLAB R2021a	MathWorks	https://www.mathworks.com
NicheNet-v2.0.0	Browaeys et al.42	https://github.com/saeyslab/nichenetr
GSEA Analysis	Mootha et al.55 Subramanian et al.56	https://www.gsea-msigdb.org/gsea/index.jsp
Survival Analysis	Tang et al.57	http://gepia2.cancer-pku.cn/#survival
pheatmap-v1.0.12	CRAN	https://cran.r-project.org/web/packages/pheatmap/
VISION-v3.0.1	Github	https://github.com/YosefLab/VISION
ggplot2-3.4.3	CRAN	https://ggplot2.tidyverse.org
circlize-0.4.15	Gu et al.58	https://cran.r-project.org/web/packages/circlize/
glmnet-4.1-8	CRAN	https://cran.r-project.org/web/packages/glmnet/
cancerclass-1.44.0	Bioconductor	https://www.bioconductor.org/packages/release/bioc/html/cancerclass.html