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. 2023 Oct 19;4(11):101247. doi: 10.1016/j.xcrm.2023.101247
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

anti-RAD51 (clone H-92) Santa Cruz Biotechnology Cat# sc-8349; RRID: AB_2253533
anti-γH2AX (clone 20E3) Cell Signaling Technology Cat# 9718; RRID: AB_2118009
anti-geminin (clone 1A8) Abcam Cat# ab104306; RRID: AB_10889692
anti-α tubulin GeneTex Cat# GTX112141; RRID: AB_10722892
anti-p53 GeneTex Cat# GTX102965; RRID: AB_1952339
anti-GAPDH GeneTex Cat# GTX100118; RRID: AB_1080976
anti-pan cytokeratin (clone AE1/AE3)-Alexa Fluor 488 conjugated Invitrogen Cat# 53-9003-82; RRID: AB_1834350
anti-PAX8 Proteintech Cat# 10336-1-AP; RRID: AB_2236705
Goat anti-rabbit IgG (HRP) GeneTex Cat# GTX213110–01; RRID: AB_10618573
Goat anti-rabbit IgG-DyLight 488 conjugated Thermo Fisher Scientific Cat# 35553; RRID: AB_1965947
Goat anti-mouse IgG-Alexa Fluor 647 conjugated Thermo Fisher Scientific Cat# A-21236; RRID: AB_2535805

Bacterial and virus strains

AdenoX-pCMV-I-SceI-mCherry This paper N/A
AdenoX-pCMV-DR-GFP-pPGK-ECFP This paper N/A

Biological samples

Primary ovarian cancer cells derived from tumor tissue This paper N/A
Primary ovarian cancer cells derived from ascites This paper N/A

Chemicals, peptides, and recombinant proteins

Olaparib Selleckchem Cat# S1060
B02 Cayman Chemical Cat# 22133

Critical commercial assays

Adeno-X Adenoviral System 3 Clontech Cat# 6322666
Adeno-X Maxi Purification Kit Clontech Cat# 631533
alamarBlue Cell Viability Reagent Thermo Fisher Scientific Cat# DAL1025
Tumor Dissociation Kit Miltenyi Biotech Cat# 130-095-929
Ammonium Chloride Solution STEMCELL Technologies Cat# 07850
Tumor Cell Isolation kit Miltenyi Biotech Cat# 130-108-339
QIAamp DNA Mini kit QIAGEN Cat# 51304

Deposited data

whole-exome sequencing datasets for OCC-2 This paper https://www.ncbi.nlm.nih.gov/sra/SRX18246139
whole-exome sequencing datasets for OCC-3 This paper https://www.ncbi.nlm.nih.gov/sra/SRX16742482
whole-exome sequencing datasets for OCC-5-a This paper https://www.ncbi.nlm.nih.gov/sra/SRX16742483
whole-exome sequencing datasets for OCC-7-a This paper https://www.ncbi.nlm.nih.gov/sra/SRX16742484
whole-exome sequencing datasets for OCC-9-a This paper https://www.ncbi.nlm.nih.gov/sra/SRX16742485
whole-exome sequencing datasets for OCC-10-a This paper https://www.ncbi.nlm.nih.gov/sra/SRX16742477
whole-exome sequencing datasets for OCC-12 This paper https://www.ncbi.nlm.nih.gov/sra/SRX16742478
whole-exome sequencing datasets for OCC-14-a This paper https://www.ncbi.nlm.nih.gov/sra/SRX16742479
whole-exome sequencing dataset for OCC-28 This paper https://www.ncbi.nlm.nih.gov/sra/SRX17907740

Experimental models: Cell lines

HeLa cells ATCC Cat# CCL-2; RRID: CVCL_0030
U2OS cells ATCC Cat# HTB-96
Hs578T cells ATCC Cat# HTB-126
MDA-MB-23 cells ATCC Cat# CRM-HTB-26
MDA-MB-436 cells ATCC Cat# HTB-130
SKOV3 cells ATCC Cat# HTB-77
TOV-21G cells ATCC Cat# CRL-3577
UWB1.289 cells ATCC Cat# CRL-2945
OVCA429 cells Obtained from Ruby Yun-Ju Huang (National Taiwan University, Taiwan) N/A
RMG1 cells Obtained from Wendy W. Hwang-Verslues (Academia Sinica, Taiwan) N/A
HCT116 cells ECACC Cat# 91091005
HCT116 BRCA2−/− cells ECACC Cat# 16071901
AdenoX-293 cells Clontech Cat# 632271

Oligonucleotides

siRNAs targeting human RAD51 GE Dharmacon Cat# J-003530-10-0020
siRNA non-targeting pool control GE Dharmacon Cat# D-001810-10-20

Recombinant DNA

pCMV6-AC-GFP OriGene Cat# PS100010
pAdenoX-PRLS Clontech Cat# 632260
pAdenoX-pCMV-GFP This paper N/A
pAdenoX-pCMV-I-SceI-mCherry This paper N/A
pAdenoX-pCMV-DR-GFP-pPGK-ECFP This paper N/A

Software and algorithms

Burrows-Wheeler Aligner v0.5.9 https://bio-bwa.sourceforge.net/ https://bio-bwa.sourceforge.net/
SAM tools v0.1.18 https://samtools.sourceforge.net/ https://samtools.sourceforge.net/
Picard v1.54 https://github.com/broadinstitute/picard https://github.com/broadinstitute/picard
Genome Analysis Toolkit v4 https://gatk.broadinstitute.org/hc/en-us https://gatk.broadinstitute.org/hc/en-us
GraphPad Prism v7 https://www.graphpad.com/ https://www.graphpad.com/