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. 2023 Nov 20;11:1296787. doi: 10.3389/fchem.2023.1296787

TABLE 1.

Functionals tested for their ability to describe group I metal–nucleic acid interactions.

Family Functional D3 a D4 a %HF b %MP2 Ref.
Double-Hybrid B2-PLYP X 53 27 Grimme (2006)
mPW2-PLYP 55 25 Schwabe and Grimme (2006)
PBE-QIDH 69 33.4 Br et al. (2014)
PBE0-DH 50 12.5 Brémond and Adamo (2011)
DSD-PBEP86 68 (51, 23) d Kozuch and Martin (2011), Rodgers and Armentrout, (2016), Sherrill et al. (2017)
RSH M11 42.8–100 c Peverati and Truhlar (2011)
MN12-SX X 25–0 c Peverati and Truhlar (2012a)
RSH meta-GGA ωB97M-V 15 Mardirossian and Head-Gordon (2016)
RSH GGA ωB97 Chai and Head-Gordon (2008a)
ωB97X X X 16 Chai and Head-Gordon (2008a)
ωB97X-D 22 Chai and Head-Gordon (2008b)
ωB97X-V 16.7 Mar et al. (2014)
HSE06 X 25–0 b Heyd et al. (2003), Heyd and Scuseria, (2004a), Heyd and Scuseria, (2004b), Heyd et al. (2005), Izmaylov et al. (2006), Krukau et al. (2006), Henderson et al. (2009)
LC-PBE Perdew et al. (1996), Iikura et al. (2001)
LC-ωPBE X Vydrov et al. (2006), Vydrov and Scuseria, (2006), Vydrov et al., (2007)
CAM-B3LYP X 19–65 b Yanai et al. (2004)
GH meta-GGA M06 27 Zhao and Truhlar (2008)
M06-2X 54 Zhao and Truhlar (2008)
M06-HF 100 Zhao and Truhlar (2006a)
BMK 42 Boese and Martin (2004)
MN15 44 Yu et al. (2016a)
PW6B95 28 Zhao and Truhlar (2005)
GH GGA BH&HLYP 50 Becke (1993a)
SOGGA11-X 40.15 Peverati et al. (2011)
B3PW91 X 20 Becke (1993b)
PBE0 X 25 Adamo and Barone (1999)
B3LYP X X 20 Lee et al. (1988), Becke, (1993b)
X3LYP X 21 Xu and Goddard (2004)
O3LYP X Cohen and Handy (2001)
TPSSh 10 Staroverov et al. (2003), Tao et al. (2003)
B97-2 21 Wilson et al. (2001)
Local meta-GGA TPSS X X Tao et al. (2003)
revTPSS Perdew et al. (2009a), Perdew et al. (2009b)
M11-L Peverati and Truhlar (2012b)
M06-L Zhao and Truhlar (2006b)
MN12-L Peverati and Truhlar (2012c)
MN15-L Yu et al. (2016b)
Local GGA mPW91 Adamo and Barone (1998)
BLYP X Becke, (1988), Lee et al. (1988), Miehlich et al. (1989)
BP86 X Becke, (1988), Lee et al. (1988)
PBE X X Perdew et al. (1996)
Local LDA SVWN5 Vosko et al. (1980)
a

Functionals indicated by an X were considered with and without the D3(BJ) or D4 empirical dispersion correction.

b

Percentage of Hartree-Fock exchange (%HF).

c

The first value is the %HF at short range and the second value is the %HF at long range.

d

The MP2 component of this functional is calculated using the spin-component-scaled formulism and the two values represent opposite- and same-spin values, respectively.