REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
β-Actin (8H10D10) Mouse mAb | Cell Signaling Technology | Cat #3700; RRID:AB_2242334 |
p44/42 MAPK (Erk1/2) (3A7) Mouse mAb | Cell Signaling Technology | #9107; RRID:AB_10695739 |
Phospho-p44/42 MAPK (Erk1/2) (Thr202/Tyr204) Antibody | Cell Signaling Technology | #9101; RRID:AB_331646 |
Akt Antibody | Cell Signaling Technology | #9272; RRID:AB_329827 |
Phospho-Akt (Thr308) Antibody | Cell Signaling Technology | #9275; RRID:AB_329828 |
Stat5 (D2O6Y) Rabbit mAb | Cell Signaling Technology | #94205; RRID:AB_2737403 |
Phospho-Stat5 (Tyr694) Antibody | Cell Signaling Technology | #9351; RRID:AB_2315225 |
Bcl-2 (124) Mouse mAb | Cell Signaling Technology | #15071; RRID:AB_2744528 |
Bcl-xL Antibody | Cell Signaling Technology | #2762; RRID:AB_10694844 |
Mcl-1 Antibody | Cell Signaling Technology | #4572; RRID:AB_2281980 |
Bim (C34C5) Rabbit mAb | Cell Signaling Technology | #2933; RRID:AB_1030947 |
BMF (E5U2J) Rabbit mAb | Cell Signaling Technology | #50542; RRID:AB_2892182 |
IRDye® 800CW Goat anti-Rabbit IgG Secondary Antibody | LI-COR Biosciences | Cat# 925-32211 RRID:AB_2651127 |
IRDye® 680RD Goat anti-Mouse IgG Secondary Antibody | LI-COR Biosciences | Cat# 925-68070, RRID:AB_2651128 |
Bmf Antibody | Novus Biologicals | Cat# NBP1-76658, RRID:AB_11040482 |
Goat anti-Rabbit IgG (H+L) Cross-Adsorbed Secondary Antibody, Alexa Fluor 647® | Thermo Fisher Scientific | Cat# A-21244, RRID:AB_2535812 |
Alexa Fluor® 647 anti-Cytochrome c Antibody | BioLegend | Cat# 612310, RRID:AB_2565241 |
PE anti-mouse CD45 Antibody | BioLegend | Cat# 103105, RRID:AB_312970 |
APC/Cyanine7 anti-human CD45 Antibody | BioLegend | Cat# 304014, RRID:AB_31440 |
CD45 (Intracellular Domain) (D9M8I) XP® Rabbit mAb | Cell Signaling Technology | Cat# 13917, RRID:AB_2750898 |
Bacterial and virus strains | ||
pCW57.1 | RRID:Addgene_41393 | |
NEB 10-beta Competent E. coli (High Efficiency) | New England Biolabs | Cat# C3019I |
Biological samples | ||
PDX #1 | This paper | HM0007 |
PDX #2 | Qin et al.61 | CD33-CART-0005 |
AML patient and healthy donor samples | UCSF Hematologic Malignancies Tissue Bank | |
Chemicals, peptides, and recombinant proteins | ||
RMC-4550 | Revolution Medicines | ID: 0694550-018 |
Venetoclax (ABT-199) | Selleckchem | Cat# S8048; CAS No. 1257044-40-8 |
Gilteritinib (ASP2215) | Selleckchem | Cat# S7754; CAS No. 1254053-43-4 |
WEHI-539 HCl | Selleckchem | Cat# S7100 CAS No. 2070018-33-4 |
Trametinib (GSK1120212) | Selleckchem | Cat# S2673; CAS No. 871700-17-3 |
S63845 | MedChem Express | Cat# HY-100741 CAS No. : 1799633-27-4 |
BIM peptide | New England Peptides | Cat# LB4609 |
Alamethicin | Enzo Life Sciences | Cat BML-A150-0005; CAS No. 27061-78-5 |
Digitonin | Milipore Sigma | Cat# D5628; Cas No. CAS Number: 11024-24-1 |
D-Mannitol | Milipore Sigma | Cat# M9647; CAS No. 69-65-8 |
Succinic acid | Milipore Sigma | Cat# S3674; CAS No. 110-15-6 |
Ethylenediaminetetraacetic acid | Milipore Sigma | Cat# E6758; CAS No. 60-00-4 |
Ethylene glycol-bis(2-aminoethylether)-N,N,N′,N′-tetraacetic acid | Milipore Sigma | Cat# E3889; CAS No. 67-42-5 |
HEPES Buffer, N-(2-Hydroxyethyl)piperazineN′-(2-ethanesulfonic acid) | Milipore Sigma | Cat# SRE0065; |
Glycine | Thermo Fisher Scientific | Cat# BP381-1 CAS No. 56-40-6 |
Doxycycline Hydrochloride | Milipore Sigma | Cat# D3072 CAS No. 10592-13-9 |
Recombinant Human GM-CSF | PeproTech | Cat# 300-03; Genpept: P04141 |
Recombinant Human Flt3-Ligand | PeproTech | Cat# 300-19; Genpept: P49771 |
Recombinant Human FGF-basic | PeproTech | Cat# 100-18B; Genpept: P09038 |
Lipofectamine™ 3000 | Thermo Fisher Scientific | Cat# L3000008 |
Lenti-X™ concentrator | TakaraBio | Cat# 631232 |
Triton™ X-100 Surfact-Amps™ Detergent Solution | Thermo Fisher Scientific | Cat# 85111 |
Paraformaldehyde Aqueous Solution | Electron Microscopy Sciences | Cat#15710-S |
Normal Goat Serum (10%) | Thermo Fisher Scientific | Cat# 50197Z |
ProLong™ Gold Antifade Mountant with DNA Stain DAPI | Thermo Fisher Scientific | Cat# P36935 |
D-Luciferin, Potassium Salt | Gold Biotechnology | Cat# LUCK-100; CAS No. 115144-35-9 |
Hematoxylin Instant | Thermo Fisher Scientific | Cat# 6765015 |
Critical commercial assays | ||
CellTiter-Glo® Luminescent Cell Viability Assay | Promega | Cat# G7573 |
Pierce™ BCA Protein Assay Kits | Thermo Fisher Scientific | Cat# 23225 |
Ras G-LISA Activation Assay Kit (Colorimetric Based) - 96 Assays | Cytoskeleton | Cat# BK131 |
CellEvent™ Caspase-3/7 Green Flow Cytometry Assay Kit | Thermo Fisher Scientific | Cat# C10427 |
RNeasy Mini Kit (50) | Qiagen | Cat# 74104 |
Discovery Purple Kit | Roche Diagnostics | Cat# 760229 |
Deposited data | ||
CRISPR (DepMap Public, Chronos) | the Cancer Dependency Map | https://depmap.org |
RNA-seq data | This paper | GEO: GSE217359 |
Experimental models: Cell lines | ||
Molm-14 | ATCC | RRID:CVCL_7916 |
MV4-11 | ATCC | RRID:CVCL_0064 |
Kasumi-1 | ATCC | RRID:CVCL_0589 |
SKNO-1 | ATCC | RRID:CVCL_2196 |
OCIAML-3 | ATCC | RRID:CVCL_1844 |
NOMO-1 | ATCC | RRID:CVCL_1609 |
HL-60 | ATCC | RRID:CVCL_0002 |
THP-1 | ATCC | RRID:CVCL_0006 |
K562 | ATCC | RRID:CVCL_0004 |
HEL | ATCC | RRID:CVCL_0001 |
U-937 | ATCC | RRID:CVCL_0007 |
HS-5 | ATCC | RRID:CVCL_3720 |
LentiX 293T | Takara Bio | RRID:CVCL_4401 |
Molm-14 PTPN11 WT-dox | This paper | N/A |
Molm-14 PTPN11 E76K-dox | This paper | N/A |
Molm-14 PTPN11 G60V-dox | This paper | N/A |
Molm-14 PTPN11 S502P-dox | This paper | N/A |
Molm-14 PTPN11 T253M/Q257L-dox | This paper | N/A |
Molm-14 MEK DD-dox | This paper | N/A |
Molm-14 AKT E17K-dox | This paper | N/A |
MV4-11 MEK DD-dox | This paper | N/A |
MV4-11 AKT E17K-dox | This paper | N/A |
Molm-14 BMF KO | This paper | N/A |
SKNO-1 BMF KO | This paper | N/A |
Molm-14 FFLuc | This paper | N/A |
Molm-14 NRAS G12C FFLuc | This paper | N/A |
Kasumi-1 FFLuc | This paper | N/A |
Molm-14 NRAS G12C | McMahon et al.14 | N/A |
Molm-14 NRAS Q61K | McMahon et al.14 | N/A |
Molm-14 FLT3 D835H | Smith et al.77 | N/A |
Molm-14 FLT3 D835V | Smith et al.77 | N/A |
Molm-14 FLT3 D835Y | Smith et al.77 | N/A |
Molm-14 FLT3 N841K | Smith et al.77 | N/A |
Molm-14 FLT3 Y842C | Smith et al.77 | N/A |
Molm-14 FLT3 F691L | Smith et al.77 | N/A |
Experimental models: Organisms/strains | ||
NOD.Cg-Prkdcscid Il2rgtm1Wjl/SzJ | The Jackson Laboratory | Strain #:005557 RRID:IMSR_JAX:005557 |
NOD.Cg-Prkdcscid Il2rgtm1Wjl Tg(CMV-IL3,CSF2,KITLG)1Eav/MloySzJ | The Jackson Laboratory | Strain #:013062 RRID:IMSR_JAX:013062 |
Oligonucleotides | ||
Human GAPDH Taqman probe | Thermo Fisher Scientific | Hs02758991_g1 |
Human OASL Taqman probe | Thermo Fisher Scientific | Hs00984387_m1 |
Human OAS1 Taqman probe | Thermo Fisher Scientific | Hs00973637_m1 |
Human IFIT2 Taqman probe | Thermo Fisher Scientific | Hs01922738_s1 |
Human BMF Taqman probe | Thermo Fisher Scientific | Hs00372937_m1 |
BMF sgRNA guide1: 5’-AAGGCCAGGGCCACAGCAGU-3’ | Synthego | Custom ID |
BMF sgRNA guide2: 5’- AAGCUCCCGGGUUGGGUCAC-3’ | Synthego | Custom ID |
BMF sgRNA guide1: 5’- GGAGCCAUCUCAGUGUGUGG-3’ | Synthego | Custom ID |
Software and algorithms | ||
GraphPad Prism | http://www.graphpad.com/ | RRID:SCR_002798 |
FlowJo | https://www.flowjo.com/solutions/flowjo | RRID:SCR_008520 |
R Project for Statistical Computing | http://www.r-project.org/ | RRID:SCR_001905 |
STAR | Dobin et al.78 | RRID:SCR_004463 |
Limma-voom package | Law et al.79 | |
ShinyGO | http://bioinformatics.sdstate.edu/go/ | RRID:SCR_019213 |
Gene Set Enrichment Analysis | Subramanian et al.39 | RRID:SCR_003199 |
NIS Elements | RRID:SCR_014329 | |
ImageJ | https://imagej.net/ | RRID:SCR_003070 |
SynergyFinder 3.0 | Ianevski et al.55 | |
ICE | Conant et al.80 |