Table 3. Pearson correlation between our pseudobulk differential expression analysis and the authors’ pseudoreplication analysis on all genes found to be significant at different adjusted p-value cut-offs from the authors’ pseudoreplication analysis.

Pseudoreplication adjusted p-value cut-off	Number of genes compared	Pearson correlation
0.01	20,152	0.8646269
0.05	23,903	0.8708275
0.1	26,382	0.8721126
0.25	32,117	0.8764692
0.5	42,022	0.8751554
1	84,467	0.826248