Table 4. The differentially expressed genes from our reanalysis using the reprocessed data and pseudobulk differential expression approach.
| Cell | logFC | logCPM | LR | p-Value | adj_pval | ensembl_id | HGNC |
|---|---|---|---|---|---|---|---|
| OPC | –4.1544663 | 4.92100803 | 21.6911445 | 3.20E-06 | 0.04985906 | ENSG00000166573 | GALR1 |
| Astro | –4.5845276 | 4.7965143 | 22.2367847 | 2.41E-06 | 0.037634 | ENSG00000137959 | IFI44L |
| Micro | –3.7616619 | 7.32875316 | 26.8149688 | 2.24E-07 | 0.00077905 | ENSG00000077238 | IL4R |
| Micro | –2.0681446 | 7.88736441 | 17.5929095 | 2.74E-05 | 0.0346187 | ENSG00000105835 | NAMPT |
| Micro | –1.6757556 | 7.58472506 | 19.1736829 | 1.19E-05 | 0.02076348 | ENSG00000118257 | NRP2 |
| Micro | –3.1556403 | 6.85232653 | 19.2064627 | 1.17E-05 | 0.02076348 | ENSG00000135363 | LMO2 |
| Micro | –3.4339265 | 6.9290472 | 19.5975589 | 9.56E-06 | 0.02076348 | ENSG00000138135 | CH25H |
| Micro | –2.8183109 | 6.77500676 | 16.907959 | 3.92E-05 | 0.04550806 | ENSG00000142408 | CACNG8 |
| Micro | 2.90076647 | 8.34560617 | 45.5144266 | 1.52E-11 | 2.11E-07 | ENSG00000144724 | PTPRG |
| Micro | 3.25867589 | 6.91671013 | 16.5519147 | 4.73E-05 | 0.0490155 | ENSG00000163106 | HPGDS |
| Micro | –2.0290905 | 7.12321166 | 16.4746746 | 4.93E-05 | 0.0490155 | ENSG00000171612 | SLC25A33 |
| Micro | –3.4657301 | 6.93307221 | 19.7883301 | 8.65E-06 | 0.02076348 | ENSG00000172243 | CLEC7A |
| Micro | –4.172807 | 7.16813583 | 34.3515807 | 4.60E-09 | 3.20E-05 | ENSG00000174600 | CMKLR1 |
| Micro | –3.1984588 | 6.87310555 | 18.5335889 | 1.67E-05 | 0.0232342 | ENSG00000227531 | RP11-202G18.1 |
| Micro | 3.40562887 | 6.9381703 | 18.5526502 | 1.65E-05 | 0.0232342 | ENSG00000228058 | RP11-552D4.1 |
| Micro | 4.46073301 | 7.66559163 | 29.7716679 | 4.86E-08 | 0.00022549 | ENSG00000253496 | RP11-13N12.1 |