Table 2.
Number and percentage of genes in sequenced exDNA from exhausted media of different fedbatch conditions (EFC and LFC at the end of the runs and EFC at 6h) compared to eccDNA [33].
The percentages refer to genes included in specific KEGG metabolic pathways either exclusively associated to respiratory metabolism (TCA cycle, pentose phosphate, oxidative phosphorylation) or common to both fermentative and respiratory metabolism (glucose pathways and cell cycle).
| Genes in exDNA | TCA cycle | Pentose phosphate | Oxidative phosphorylation | Glycolysis / gluconeogenesis | Cell cycle | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Genes in KEGG pathway | 31 | 28 | 76 | 55 | 130 | ||||||
| EFC | 1001 | 2 | 6% | 3 | 11% | 0 | 0% | 10 | 18% | 24 | 18% |
| EFC_6h | 1823 | 7 | 23% | 11 | 39% | 2 | 3% | 17 | 31% | 45 | 35% |
| LFC | 4632 | 22 | 71% | 23 | 82% | 4 | 5% | 40 | 73% | 101 | 78% |
| eccDNA | 1861 | 16 | 52% | 10 | 36% | 2 | 3% | 0 | 0% | 42 | 32% |