Table 3.
List of the amino acids that form the identified major binding pocket A. 133 amino acids form one of the major pockets (Pocket A) of RdRp (columns 1–7) and the key residues of RdRp in complex with carvedilol and its metabolites (column 8).
| 133 amino acids that form one of the major pockets (Pocket 1) of RdRp | Key residues | ||||||
|---|---|---|---|---|---|---|---|
| ALA_34_A | VAL_166_A | TYR_217_A | THR_248_A | PRO_620_A | SER_709_A | LEU_775_A | ASP_36_A |
| PHE_35_A | PRO_169_A | ASP_218_A | ARG_249_A | LYS_621_A | VAL_720_A | VAL_776_A | PHE_45_A |
| ASP_36_A | ILE_171_A | PHE_219_A | TYR_455_A | ARG_624_A | LEU_723_A | ALA_777_A | VAL_128_A |
| TYR_38_A | LEU_172_A | GLY_220_A | ARG_457_A | ALA_625_A | GLN_724_A | PHE_782_A | ARG_132_A |
| PHE_45_A | VAL_174_A | ASP_221_A | TYR_458_A | PRO_627_A | LEU_727_A | SER_784_A | HIS_133_A |
| MET_124_A | TYR_175_A | PHE_222_A | ASN_459_A | LEU_630_A | TYR_728_A | VAL_785_A | LEU_240_A |
| ALA_125_A | ALA_176_A | PRO_232_A | LEU_460_A | MET_633_A | LEU_731_A | LEU_786_A | CYS_464_A |
| LEU_127_A | LEU_178_A | VAL_233_A | PRO_461_A | ASN_695_A | TYR_732_A | TYR_787_A | ASP_465_A |
| VAL_128_A | ARG_181_A | VAL_234_A | THR_462_A | ILE_696_A | ARG_733_A | TYR_788_A | GLN_468_A |
| TYR_129_A | VAL_182_A | SER_236_A | MET_463_A | CYS_697_A | PHE_741_A | GLN_789_A | LEU_469_A |
| ALA_130_A | THR_189_A | TYR_237_A | CYS_464_A | GLN_698_A | PHE_745_A | ASN_790_A | VAL_472_A |
| LEU_131_A | PHE_192_A | TYR_238_A | ASP_465_A | ALA_699_A | TYR_748_A | ASN_791_A | CYS_697_A |
| ARG_132_A | CYS_193_A | SER_239_A | GLN_468_A | VAL_700_A | LEU_749_A | VAL_792_A | VAL_700_A |
| HIS_133_A | VAL_204_A | LEU_240_A | LEU_469_A | THR_701_A | HIS_752_A | THR_701_A | |
| PHE_134_A | LEU_205_A | LEU_241_A | PHE_471_A | ALA_702_A | PHE_753_A | VAL_704_A | |
| THR_141_A | THR_206_A | PRO_243_A | VAL_472_A | ASN_703_A | MET_755_A | ASN_705_A | |
| LEU_142_A | LEU_207_A | ILE_244_A | VAL_475_A | VAL_704_A | ILE_757_A | LEU_708_A | |
| ILE_145_A | ASP_208_A | LEU_245_A | TYR_479_A | ASN_705_A | ALA_762_A | TYR_732_A | |
| LEU_146_A | ASN_209_A | THR_246_A | MET_615_A | LEU_707_A | VAL_764_A | TYR_788_A | |
| PHE_165_A | TRP_216_A | LEU_247_A | TRP_617_A | LEU_708_A | TYR_770_A | GLN_789_A | |
Residues in bold are the key residues that contribute to the formation of RdRp in complexes with carvedilol and its metabolites.