Tissue-resident, extravascular Ly6c− monocytes are critical for inflammation in the synovium

. Author manuscript; available in PMC: 2023 Dec 5.

Published in final edited form as: Cell Rep. 2023 May 18;42(5):112513. doi: 10.1016/j.celrep.2023.112513

Genotype	Total Cells Detected	Median Genes/Cell	Median UMIs/Cell	Min UMI/cell	Max UMI/cell	Max % MT reads/Cell	# cells after filtering
C57Bl/6 (CD64⁻)	9447	2681	9323	4000	35000	7	7160
CCR2^−/−(CD64⁻)	4867	3184	12927	5500	40000	7	3621
NR4A1^−/−(CD64⁻)	13375	818	1494	4000	38000	7	2867
LFA1^−/−(CD64⁻)	7908	2622	8880	3500	31000	5	5444
C57Bl/6 MHCII⁻ CITE-seq	3529	3236	11887	3500	45000	5	2967
C57Bl/6 MHCII⁺ CITE-seq	8753	3196	11547	4500	40000	5	6061
C57Bl/6 MHCII− (Day 7 STIA) CITE-seq	10131	2947	10731	3500	45000	5	8011
C57BL/6 CD64+ CITE-seq	9914	3001	9238	5000	40000	10	6051
RA Patient CITE-seq	2754	4270	20758	8454	63404	10	1614