Table 1.

Number of repeats in the satellite and independent haplotypes

Summary of RepeatMasker annotated repeats within the inverted region and outside of the inverted region on chromosome 11. For the independent and satellite haplotype, the number of each repeat class and the total length of all elements are shown. The satellite–independent columns show the difference in number or length of elements between the 2 haplotypes. Insertions were tabulated only for the inverted region, because the remainder of chromosome 11 is not phased. The color codes for the columns representing the satellite–independent comparison highlight the most notable differences; green and red mean higher and lower numbers in the Satellite haplotype, respectively.