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. 2023 Dec 7;12:RP88658. doi: 10.7554/eLife.88658

Figure 8. Enlarged cells are more resistant to additional stress.

(A) Scheme of cell size enlargement or reduction experiments. CHX, cycloheximide; CDKi, CDK4/6 inhibitor. (B) Cell size was first enlarged by treating cells with 100 nM CDKi for 3 days; then, cells were washed and subjected to chronic HS at 40 °C for 3 more days (CDKi >HS). Cell size (% FSC-MFI; grey part of the bars) and cell death (% annexin V and PI-positive; red part of the bars) were measured by flow cytometry. The values for cell size and death in the different experimental conditions are normalized to the respective 37 °C controls (n=3 biologically independent experiments). (C) Cells were first pretreated with 7.5 nM rapamycin (Rapa) for 3 days to reduce the cell size. After that, the cells were subjected to chronic HS at 40 °C for 3 days (Rapa >HS). HS >Rapa, the two treatments were done the other way around. The cell size (% FSC-MFI) and relative cell death (% annexin V and PI-positive) were quantified by flow cytometry. The values for cell size and death in different experimental conditions are normalized to the respective 37 °C control (n=3 biologically independent experiments). (D) Scheme of experiments aimed at determining impact of limiting physical space on cell size increase. (E and F) Phase-contrast micrographs of RPE1 cells seeded in different numbers to restrict the space for cell size increase during adaptation to chronic HS (representative images of n=4 biologically independent experiments). The size bar in the top left panel indicates 100 µM. The cell size (% FSC-MFI) and relative cell death (% annexin V-PI positive) are quantified by flow cytometry. For the bar graphs, the values for cell size and death in different conditions are normalized to the low density (dns) cell population at 37 °C day 0 (n=4 biologically independent experiments). The data are represented as mean values ± SEM for all bar graphs. The statistical significance between the groups was analyzed by two-tailed unpaired Student’s t-tests.

Figure 8—source data 1. Values related to all graphs.

Figure 8.

Figure 8—figure supplement 1. Smaller cells are more susceptible to additional stress.

Figure 8—figure supplement 1.

(A) Cell size was enlarged by treating cells with 100 nM CDKi for 3 days. Fold change of cell size (represented by the FSC-MFI values) and total proteins (determined as MFI-FL1 values) were analyzed by flow cytometry. Cells were fixed, and total proteins were stained using Alexa Fluor 488 NHS ester (n=3 biologically independent experiments). (B) Coomassie-stained protein gel showing protein samples from equal numbers of cells treated or not with CDKi (representative images of n=2 biologically independent experiments). (C) Cell size was enlarged by treating cells with CDKi for 3 days, before cells were treated with sodium arsenite (40 μM) for 3 days. Cell size (% MFI) and cell death (% annexin V and PI-positive) are measured by flow cytometry. α KO, Hsp90α KO; β KO, Hsp90β KO cells. (D) Order of treatment experiment as in Figure 8C, but with HEK cells. Cell size (% MFI) and relative cell death (% annexin V and PI-positive) are quantified by flow cytometry. The values for cell size and death in the different experimental conditions are normalized to the respective 37 °C controls (n=3 biologically independent experiments). (E) Cell size was reduced by serum starvation (starved) for 3 days before subjecting cells to chronic HS for 3 additional days (starved >HS). HS >starved, the two treatments were done the other way around (HS >starved). Cell size (% MFI) and relative cell death (% annexin V-PI positive) were quantified by flow cytometry and normalized to the respective 37 °C controls (n=3 experimental samples). (F) Order of treatment experiment with CHX and rapamycin to reduce cell size first for 3 days and then subjecting cells to oxidative stress with 10 µM sodium arsenite (Ars) for 1 day. Cell size (% MFI) and relative cell death (% annexin V and PI-positive) were quantified by flow cytometry and normalized to the Ars single treatment controls (n=3 experimental samples).
Figure 8—figure supplement 1—source data 1. Values related to all graphs of Figure 8—figure supplement 1.