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. 2023 Nov 22;14:1250806. doi: 10.3389/fmicb.2023.1250806

Figure 2.

Figure 2

Comprehensive overview of the most commonly ML-based software applications employed in microbiome data analysis. These software tools are categorized based on their primary application into feature generation, feature analysis, and data integration. It is worth noting that numerous software options are applicable to both 16S rRNA gene sequencing data and shotgun metagenomics. Detailed descriptions of these software tools can be found in subsequent sections of the manuscript.