Key Resources Table
| Reagent type (species) or resource | Designation | Source or reference | Identifiers | Additional information |
|---|---|---|---|---|
| Software, algorithm | Python 3 | http://www.python.org | RRID:SCR_008394 | |
| Software, algorithm | pymaid | https://github.com/schlegelp/PyMaid | python library | |
| Software, algorithm | FAFBseg | https://github.com/flyconnectome/fafbseg-py | python library | |
| Software, algorithm | R | https://www.r-project.org/ | ||
| Software, algorithm | R Studio | https://www.rstudio.com/ | ||
| Software, algorithm | Natverse | https://natverse.org | DOI: 10.7554/eLife.53350 | collection of R packages for neuroanatomical analysis |
| Software, algorithm | Tidyverse | https://www.tidyverse.org/ | R package | |
| Software, algorithm | alphashape 3d | https://CRAN.R-project.org/package=alphashape3d | R package | |
| other | FAFB | Zheng et al. 2018; https://v2.virtualflybrain.org/ | EM data set | |
| other | FlyWire | Dorkenwald et al. 2020; https://flywire.ai/ | EM auto-segmentation |