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[Preprint]. 2023 Dec 1:2023.12.01.23299073. [Version 1] doi: 10.1101/2023.12.01.23299073

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Fig. 4 | — a, Discovery rate of each QTL type in either the GENCODE isoform reference (orange) of the augmented GENCODE + Novel Isoform reference (green). b, Pairwise sharing of genes with significant QTLs between each pair of QTL modalities in either the GENCODE reference (lower triangle) or the augmented GENCODE+Novel Isoform reference. c-e, Enrichment tests (two-sided Fisher’s exact test) comparing locations of significant lead QTL SNPs for each feature type (q <0.05) compared to null SNPs (q > 0.05). * refers to P < 0.05 after Bonferroni correction for multiple testing. f, Estimated proportion of heritability mediated by cis-genetic component of expression, junction usage or transcript usage ( ²med/ ²g) in three diseases by microglia and bulk dorsolateral prefrontal cortex.