Table 3.
Differentially expressed genes associated with multiple hormone pathways, cell cycle, and cell wall formation.
| Gene ID | Gene Description | log2 Fold Change |
p-Value | Regulation |
|---|---|---|---|---|
| Genes involved in auxin pathway | ||||
| LOC_Os04g56850 | Auxin response factor, OsARF11 | 2.56219 | 2.90 × 10−6 | Up |
| LOC_Os01g59110 | Similar to indole-3-acetate beta-glucosyl transferase | 2.0965 | 1.48 × 10−18 | Up |
| LOC_Os01g69070 | Similar to Efflux carrier of polar auxin transport, OsPIN5a | 1.69253 | 7.39 × 10−10 | Up |
| LOC_Os03g08850 | Auxin receptor; auxin-signaling F-Box (AFB) gene, OsAFB6 | 1.42947 | 6.45 × 10−10 | Up |
| LOC_Os02g07110 | OsSAUR6-Auxin-responsive SAUR gene family member | 1.39592 | 1.42 × 10−5 | Up |
| LOC_Os01g07500 | Tryptophan amino transferase, FIB; OsTAR2; OsTAA1 | 1.34337 | 2.07 × 10−7 | Up |
| LOC_Os10g05690 | AUX1/LAX gene; auxin carrier; auxin influx transporter, OsAUX4 | −2.65314 | 1.54 × 10−6 | Down |
| LOC_Os05g37470 | AUX1/LAX gene; auxin carrier; auxin influx transporter OsAUX3; qGL5 | −1.42293 | 0.00015 | Down |
| LOC_Os02g56120 | OsIAA9-Auxin-responsive Aux/IAA gene family member | −1.57906 | 0.00380 | Down |
| LOC_Os01g53880 | Auxin-responsive Aux/IAA gene family member, OsIAA6 | −1.4906 | 1.74 × 10−6 | Down |
| LOC_Os07g25540 | IAA synthetic pathway gene, OsYUCCA6 | −1.32218 | 0.00781 | Down |
| Genes involved in GA pathway | ||||
| LOC_Os07g01340 | Gibberellin 2-oxidase gene, OsGA2ox5 | 2.34471 | 4.40 × 10−11 | Up |
| LOC_Os01g08220 | Gibberellin 3β-hydroxylase, GA metabolism, d18; OsGA3ox2 | 1.38532 | 4.77 × 10−5 | Up |
| LOC_Os01g66100 | Semidwarf-1; gibberellin 20-oxidase gene, sd1, OsGA20ox2 | 1.30841 | 0.00011 | Up |
| LOC_Os03g21400 | Cytochrome P450 gene; gibberellin 13-oxidase, GA homeostasis, CYP714B2 | 1.27219 | 1.42 × 10−11 | Up |
| LOC_Os07g44900 | Gibberellin receptor GID1L2 | 1.48675 | 1.57 × 10−10 | Up |
| LOC_Os09g28230 | Gibberellin receptor GID1L2 | 1.28099 | 1.08 × 10−12 | Up |
| Genes involved in CK pathway | ||||
| LOC_Os05g08480 | UDP-glucuronosyl/UDP-glucosyltransferase family protein, cytokinin-O-glucosyltransferase 1 | 3.16484 | 2.15 × 10−22 | Up |
| LOC_Os07g30610 | UDP-glucuronosyl/UDP-glucosyltransferase family protein, cytokinin-O-glucosyltransferase 2 | 1.29078 | 3.37 × 10−7 | Up |
| LOC_Os01g71310 | Cytokinin oxidase/dehydrogenase family gene, OsCKX4; REN1 | 2.1701 | 6.74 × 10−12 | Up |
| LOC_Os10g34230 | Cytokinin oxidase/dehydrogenase, OsCKX3 | 1.19109 | 0.00044 | Up |
| LOC_Os04g57720 | A-type response regulator gene, OsRR6 | 1.19145 | 6.26 × 10−5 | Up |
| LOC_Os03g50860 | Cytokinin receptor family, OHK4 | 1.12033 | 9.44 × 10−8 | Up |
| Genes related to cell cycle processes | ||||
| LOC_Os07g30240 | Meiotic recombination; MutS-homolog family gene; ZMM protein, OsMSH4 | 2.89183 | 2.12 × 10−12 | Up |
| LOC_Os12g04980 | Homologous pairing aberration in rice meiosis; meiosis-specific DNA recombinase, OsDMC1A; DMC1A | 1.72769 | 0.00218 | Up |
| LOC_Os04g53680 | Rice cyclin gene, CycP1;1 | 1.44644 | 9.56 × 10−9 | Up |
| LOC_Os01g13260 | Rice cyclin gene, CycA1;1 | −1.24606 | 0.00589 | Down |
| LOC_Os05g33040 | P-type cyclin gene, OsCYCP1;1; CycP3;1 | −1.27283 | 4.56 × 10−5 | Down |
| LOC_Os05g41880 | Meiotic reciprocal recombination; MutS-homolog gene; ZMM protein, OsMSH5 | −1.23514 | 0.00798 | Down |
| LOC_Os09g38768 | Cell cycle control protein | −1.16037 | 0.00016 | Down |
| Genes related to cell wall formation | ||||
| LOC_Os08g01330 | NAC Transcription Factor, affects the synthesis of cellulose in the secondary wall, OsSWN3; NAC31 | 2.32202 | 1.28 × 10−6 | Up |
| LOC_Os10g29470 | Cinnamyl alcohol dehydrogenase 3, participates in lignin biosynthesis, OsCAD3 | 1.16085 | 2.48 × 10−9 | Up |
| LOC_Os04g50770 | R2R3-type MYB family transcription factor, regulation of cellulose biosynthesis during secondary cell wall formation | −2.49826 | 1.01 × 10−7 | Down |
| LOC_Os06g04090 | NAC transcription factor, regulation of secondary wall biosynthesis by affects the content of lignin, OsSWN1 | −1.25174 | 0.00072 | Down |
| LOC_Os10g40960 | 2OG-Fe (II) oxygenase family protein, regulating the formation of secondary cell walls by affecting their components, RL14 | −1.09748 | 3.86 × 10−6 | Down |
| LOC_Os08g02300 | NAC Transcription Factor, OsSWN2; NAC29, affects cellulose synthesis | −1.05195 | 0.00827 | Down |