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. 2023 Sep 27;622(7983):552–561. doi: 10.1038/s41586-023-06569-5

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© The Author(s) 2023, corrected publication 2023

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

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Extended Data Fig. 5 — a,b, Spatial plots of 20 sample slices coloured by CCF anatomical labels according to the Allen Institute 3D Mouse Brain Atlas²⁰ (a) and top-level molecularly defined tissue regions (b). Each dot represents a cell. c, Heatmap showing the correspondence between main anatomical regions and top-level molecularly defined tissue regions. d,e, Marker gene heatmaps for top-level molecular tissue regions (top ten markers per region, ranked by z-scores of mean expression across regions, d) and sublevel molecular tissue regions (top three markers per region, ranked by z-scores of mean expression across regions, e). Tissue region abbreviations: OB, olfactory bulb; CTX, cerebral cortex; CBX, cerebellar cortex; CNU, cerebral nuclei; TH, thalamus; HY, hypothalamus; MB_P_MY, midbrain, pons, and medulla; FT, fibre tracts; VS, ventricular systems; H, habenula; MYdp, medulla, dorsoposterior part; HPFmo, non-pyramidal area of hippocampal formation; MNG, meninges; ENTm, entorhinal area, medial part; HIP, hippocampal region; DG, dentate gyrus; STR, striatum; CTXpl, cortical plate; LSX, lateral septal complex; PAL, pallidum; HB, hindbrain; CBN, cerebellar nuclei. Data are provided in the accompanying Source Data file.

Source data