Table 4.

Link prediction performance on the BioKG dataset (in percent)

Method	Pretrained	MRR	H@1	H@3	H@10
TransE		20.61	12.15	22.14	36.27
+ BioBLP-P		14.76	8.42	15.60	25.92
+ BioBLP-P	$✓$	14.87	8.47	15.67	26.16
+ BioBLP-M		6.56	4.46	6.78	9.90
+ BioBLP-M	$✓$	8.72	6.22	9.42	13.10
+ BioBLP-D		7.42	4.91	7.39	11.62
+ BioBLP-D	$✓$	15.74	11.73	16.44	23.04
ComplEx		42.75	31.55	48.09	65.50
+ BioBLP-P		16.53	11.13	17.17	26.92
+ BioBLP-P	$✓$	34.88	25.11	39.52	54.83
+ BioBLP-M		1.68	1.24	1.86	2.49
+ BioBLP-M	$✓$	1.78	1.37	1.93	2.54
+ BioBLP-D		0.01	0.00	0.00	0.02
+ BioBLP-D	$✓$	0.45	0.36	0.43	0.55
RotatE		55.20	44.46	61.95	74.76
+ BioBLP-P		45.29	35.60	51.33	62.89
+ BioBLP-P	$✓$	47.30	36.56	54.59	66.10
+ BioBLP-M		10.40	7.02	10.40	16.30
+ BioBLP-M	$✓$	14.34	11.14	14.79	19.78
+ BioBLP-D		11.60	8.79	12.43	16.67
+ BioBLP-D	$✓$	49.68	40.62	55.30	66.26