Table 6.
GSC+ |
EHR |
|||||
---|---|---|---|---|---|---|
Method | Precision | Recall | F1 | Precision | Recall | F1 |
Exact matching | 93.3 | 0.3 | 0.7 | 80.3 | 0.4 | 0.8 |
PhenoTagger | 34.6 | 17.3 | 23.1 | 58.8 | 19.4 | 29.2 |
ClinPheno | 28.8 | 12.3 | 17.2 | 43.2 | 17.2 | 24.6 |
Doc2HPO | 34.1 | 7.7 | 12.6 | |||
Monarch Annotator | 12.1 | 3.2 | 5.1 | |||
NCBO Annotator | 12.5 | 3.32 | 5.2 | |||
TBLAT | 96.0 | 24.7 | 39.3 | 98.5 | 40.7 | 57.6 |
Bolded values represent the best F1 score in class.