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. 2023 Nov 29;9(11):001146. doi: 10.1099/mgen.0.001146

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© 2023 The Authors

This is an open-access article distributed under the terms of the Creative Commons Attribution License. This article was made open access via a Publish and Read agreement between the Microbiology Society and the corresponding author’s institution.

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Fig. 2. — Key surveillance metrics derived from consensus genomes submitted. (a) Pangolin lineage assignments from consensus genomes submitted. Participant ID annotated where discordant. (b) Maximum-likelihood tree of consensus genomes submitted, excludes genomes<50 % coverage; and BS03 and BS08 for LB10. Nodes with teal markers indicate branch support >80 %. The heatmap denotes the sequencing platform, primer scheme, and PANGO lineage called for each tip. Phylogenetic tree visualized with toytree v1.0 (https://github.com/eaton-lab/toytree).