Table 1.
Results of the annotation of the main carbapenem resistance genes of interest
|
OXA-48 |
KPC |
VIM |
NDM |
IMP |
GES |
|
|---|---|---|---|---|---|---|
|
Original metadata (M) |
315 |
95 |
46 |
12 |
2 |
1 |
|
Confirmed with gene prediction: M+/GP+ |
291 |
85 |
42 |
9 |
2 |
1 |
|
Confirmed with PCR: M+/GP?/PCR+ |
9 |
6 |
0 |
1 |
0 |
0 |
|
Contamination/conflict: GP≠PCR |
3 |
2 |
2 |
1 |
0 |
0 |
|
Not confirmed: M+/GP−/PCR− |
12 |
2 |
2 |
1 |
0 |
0 |
|
Metadata incorrect: M−/GP+/PCR+ |
3 |
0 |
1 |
0 |
2 |
0 |
|
Final: A+B+E |
303 |
91 |
43 |
10 |
4 |
1 |
M, metadata; GP, gene prediction (gene found in the assembly); PCR, PCR on glycerol stock.