Table 2.

List of Crop/clad Community GGB Databases that integrate various data types, including whole-genome data, genotype, phenotype, QTL, GWAS and germplasm data. Refer to Supplementary Table S3 for data types and metadata for each database

Species/Crop	Database	Database URL
Arabidopsis	TAIR	https://www.arabidopsis.org/
Cassava	CassavaBase	https://www.cassavabase.org/
Citrus	Citrus Genome Database	https://www.citrusgenomedb.org/
Citrus/Diaphorina citri/Ca. Liberibacter asiaticus	Citrus Greening	https://www.citrusgreening.org/
Cotton	CottonGen	https://www.cottongen.org/
Cucurbit	Cucurbit Genomics	http://cucurbitgenomics.org/
Forest trees	TreeGenes	https://treegenesdb.org
	Hardwood Genomics	http://www.hardwoodgenomics.org/
Grains	GrainGenes	https://wheat.pw.usda.gov
	Gramene	https://www.gramene.org/
	SorghumBase	https://www.sorghumbase.org/
	Triticeae toolbox, T3	https://wheat.triticeaetoolbox.org/
	WheatIS	https://wheatis.org
	KitBase	http://kitbase.ucdavis.edu/
Legumes	KnowPulse	https://knowpulse.usask.ca/
	Legume Information System	https://www.legumeinfo.org/
	PeanutBase	https://peanutbase.org
Pulses	Pulse Crop Database	https://www.pulsedb.org/
	Soybase	https://www.soybase.org/
Maize	MaizeGDB	https://maizegdb.org/
Musa	MusaBase	https://www.musabase.org/
Rosaceae	Genome Database for Rosaceae	https://www.rosaceae.org/
Solanaceae	Sol Genomics	https://solgenomics.net/
Sweet Potato	SweetPotatoBase	https://www.sweetpotatobase.org/
Vaccinium	Genome Database for Vaccinium	https://www.vaccinium.org/
Yam	YamBase	https://www.yambase.org/
Comparative genomics database used by multiple communities
A comparative genomics database for ∼300 plant species	Phytozome	https://phytozome-next.jgi.doe.gov/
A comparative genomics database hosting 118 genomes from models, crops, fruits, vegetables, etc.	Gramene	https://www.gramene.org/
Others	AgBase	https://agbase.arizona.edu/
	Bio-Analytic Resource	https://bar.utoronto.ca/