TABLE 2.
Differentially abundant ASVs in the uterine microbiota of cows that became pregnant (n = 31) or remained open (n = 27) a following artificial insemination
| ASV ID | baseMean | log2 fold change | lfcSE | adj P value | Phylum | Family | Genus | Species |
|---|---|---|---|---|---|---|---|---|
| ASV644 | 16.7 | 5.64 | 1.33 | 0.0053 | Firmicutes | Monoglobaceae | Monoglobus | NA |
| ASV1493 | 11.2 | 4.41 | 1.34 | 0.0456 | Firmicutes | [Eubacterium] coprostanoligenes group | NA | NA |
| ASV592 | 27.9 | 4.24 | 1.36 | 0.0747 | Firmicutes | Oscillospiraceae | UCG-005 | NA |
| ASV957 | 30.8 | 4.11 | 1.15 | 0.0194 | Firmicutes | Ruminococcaceae | Faecalibacterium | prausnitzii |
| ASV612 | 10.0 | 3.96 | 0.90 | 0.0036 | Firmicutes | Christensenellaceae | Christensenellaceae R-7 group | NA |
| ASV866 | 12.1 | 3.55 | 1.20 | 0.0930 | Actinobacteriota | NA | NA | NA |
| ASV385 | 21.2 | 3.47 | 1.12 | 0.0747 | Bacteroidota | Prevotellaceae | Prevotella_7 | NA |
| ASV682 | 19.7 | 3.42 | 1.19 | 0.0970 | Firmicutes | Lachnospiraceae | [Ruminococcus] gauvreauii group | NA |
| ASV506 | 13.9 | 2.74 | 0.95 | 0.0970 | Bacteroidota | Rikenellaceae | Rikenellaceae RC9 gut group | NA |
| ASV401 | 12.9 | 2.49 | 0.81 | 0.0753 | Firmicutes | Oscillospiraceae | UCG-002 | NA |
| ASV103 | 63.7 | 2.04 | 0.52 | 0.0083 | Bacteroidota | Prevotellaceae | Prevotellaceae UCG-004 | NA |
| ASV604 | 17.1 | 2.01 | 0.70 | 0.0970 | Firmicutes | UCG-010 | NA | NA |
| ASV321 | 22.4 | 1.95 | 0.53 | 0.0159 | Firmicutes | Oscillospiraceae | UCG-005 | NA |
| ASV225 | 43.3 | 1.85 | 0.49 | 0.0115 | Firmicutes | [Eubacterium] coprostanoligenes group | NA | NA |
| ASV177 | 44.0 | 1.40 | 0.48 | 0.0970 | Firmicutes | [Eubacterium] coprostanoligenes group | NA | NA |
| ASV57 | 121.7 | 1.34 | 0.46 | 0.0970 | Firmicutes | Oscillospiraceae | UCG-005 | NA |
| ASV77 | 157.9 | 1.07 | 0.35 | 0.0758 | Firmicutes | Lachnospiraceae | Shuttleworthia | NA |
| ASV44 | 145.9 | 0.78 | 0.24 | 0.0418 | Firmicutes | [Eubacterium] coprostanoligenes group | NA | NA |
| ASV288 | 39.6 | 0.91 | 0.30 | 0.0758 | Firmicutes | UCG-010 | NA | NA |
| ASV308 | 33.3 | 1.84 | 0.63 | 0.0970 | Firmicutes | Oscillospiraceae | UCG-005 | NA |
| ASV452 | 35.1 | 1.92 | 0.63 | 0.0758 | Firmicutes | Oscillospiraceae | NK4A214 group | NA |
| ASV205 | 63.1 | 2.34 | 0.61 | 0.0109 | Firmicutes | f__[Eubacterium] coprostanoligenes group | NA | NA |
| ASV2694 | 9.2 | 3.84 | 1.15 | 0.0418 | Proteobacteria | NA | NA | NA |
| ASV330 | 16.7 | 3.86 | 1.08 | 0.0194 | Euryarchaeota | Methanobacteriaceae | Methanobrevibacter | ruminantium |
| ASV16 | 167.8 | 4.56 | 1.14 | 0.0083 | Fusobacteriota | Leptotrichiaceae | NA | NA |
| ASV1255 | 21.9 | 4.91 | 1.34 | 0.0159 | Proteobacteria | NA | NA | NA |
| ASV12 | 28.0 | 5.36 | 1.33 | 0.0083 | Fusobacteriota | Fusobacteriaceae | Fusobacterium | necrophorum |
| ASV446 | 22.4 | 7.19 | 1.30 | 0.0000 | Proteobacteria | NA | NA | NA |
a
Positive log2 fold change values indicate that an ASV was more abundant in the pregnant cows and vice versa.