TABLE 1.
Identifying LPMO-related proteins encoded in the P. putredinis NO1 genome a
| Coding region | GenBank accession | Protein ID | Identified by searching approach | InterPro annotation | ||
|---|---|---|---|---|---|---|
| Sequence | Domain | Structure | ||||
| FUN_000653-T1 | CAI7987917.1 | PutMoA | ✔ | AA16 LPMO | ||
| FUN_000713-T1 | CAI7987978.1 | PutMoB | ✔ | Rho factor associated | ||
| FUN_002573-T1 | CAI7991617.1 | PutMoC | ✔ | – | ||
| FUN_002890-T1 | CAI7992277.1 | PutMoD | ✔ | AA16 LPMO | ||
| FUN_002962-T1 | CAI7992399.1 | PutMoE | ✔ | – | ||
| FUN_003190-T1 | CAI7992922.1 | PutMoF | ✔ | Ferritin-like | ||
| FUN_003535-T1 | CAI7993628.1 | PutMoG | ✔ | AA13 LPMO | ||
| FUN_003783-T1 | CAI7994168.1 | PutMoH | ✔ | – | ||
| FUN_006366-T1 | CAI7999797.1 | PutMoI | ✔ | ✔ | ✔ | AA9 LPMO |
| FUN_006413-T1 | CAI7999893.1 | PutMoJ | ✔ | AA9 LPMO | ||
| FUN_006553-T1 | CAI8000144.1 | PutMoK | ✔ | – | ||
| FUN_007242-T1 | CAI8001774.1 | PutMoL | ✔ | AA9 LPMO | ||
| FUN_007666-T1 | CAI8002525.1 | PutMoM | ✔ | ✔ | ✔ | AA9 LPMO |
| FUN_008106-T1 | CAI8003467.1 | PutMoN | ✔ | ✔ | AA9 LPMO | |
| FUN_009239-T1 | CAI7992001.1 | PutMoO | ✔ | – | ||
| FUN_010012-T1 | CAI8003342.1 | PutMoP | ✔ | – | ||
a
Coding regions of proteins related to LPMOs identified through genome searching approaches with the sequence of an A. niger AA9 LPMO (E-value cutoff = 1 × 10−5), the Pfam AA9 HMM (significance threshold = 0.01), and the structure of the A. niger AA9 LPMO (lowest percentage match = 50%) and which were not annotated as AA9 CAZymes by dbCAN. InterPro annotations were retrieved where possible