Table 1.

Notation reference.

Symbol	Description	Default value
b	Budget threshold on selected loci	0.035
$c_1,c_2,c_3$	Weights for score function $\mathcal{S}(i)$	1.0
f	Objective function	N/A
γ	Fragmentation penalty in Equation (3)	1.0
K	Number of input samples	N/A
${\ell }_i$	Decision variable for ith locus	N/A
$\mathbf{\ell }$	Vector of decision variables	N/A
L	Fixed interval size of input signals	50
$\mathcal{L}$	Contiguous genomic region	N/A
n	Number of loci in $\mathcal{L}$	N/A
N	RR iterations	50
$\mathcal{S}(·)$	Locus score function	N/A
${\mathbf{S}}_{\mathcal{L}}$	K × n signal matrix over $\mathcal{L}$	N/A
τ	Median enrichment threshold in $\mathcal{S}(·)$	0