Skip to main content
. 2023 Dec 12;10:891. doi: 10.1038/s41597-023-02811-x

Table 4.

Statistics for annotated Pogonophryne albipinna transposable elements.

Class Number of elements Length occupied (bp) Percentage of sequence (%)
SINEs: 20,523 3,063,718 0.29%
   MIRs 13,231 2,031,457 0.19%
LINEs: 174,171 59,316,996 5.50%
   LINE1 4,887 1,339,549 0.12%
   LINE2 110,647 43,014,081 4.00%
LTR elements: 471,673 192,373,177 17.91%
   Gypsy 138,972 60,560,082 5.64%
   DIRSs 10,542 6,693,107 0.62%
RC:   Helitrons 10,174 5,687,850 0.53%
DNA elements: 531,943 165,424,411 15.38%
   hAT-Ac 141,912 43,112,186 4.01%
Unclassified: 431,689 90,165,374 8.39%
Total interspersed repeats: 1,640,173 516,031,526 48.03%
Low complexity: 24,782 1,477,563 0.14%
Satellites: 11,185 2,123,109 0.20%
Simple repeats: 277,977 24,329,247 2.26%
Ribosomal RNAs: 286 30,590 0.00%
Small nuclear RNAs: 511 169,931 0.02%
Transfer RNAs: 1,822 389,123 0.04%
Total bases masked: 1,956,736 544,551,089 50.68%