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. 2023 Dec 13;624(7991):317–332. doi: 10.1038/s41586-023-06812-z

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© The Author(s) 2023

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

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Extended Data Fig. 16 — (a) Correspondence between assigned CCFv3 regions for MERFISH cells in glutamatergic, dopaminergic, and serotonergic cell types to predicted CCFv3 regions based on imputed transcriptomes of these MERFISH cells. Each row is normalized by dividing by the maximum number. Insert in the lower left corner shows the correspondence between assigned and predicted regions for glutamatergic, dopaminergic, and serotonergic cell types. Insert in the upper right corner highlights the correspondence between assigned and predicted subregions in midbrain. (b) Correspondence between assigned CCFv3 regions for MERFISH cells in GABAergic cell types and predicted CCFv3 regions based on imputed transcriptomes of these MERFISH cells. Insert in the lower left corner shows the correspondence between assigned and predicted regions for GABAergic cell types. Insert in the upper right corner highlights the correspondence between assigned and predicted subregions in midbrain.

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