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. 2023 Nov 30;11:1264808. doi: 10.3389/fchem.2023.1264808

TABLE 1.

Bond interactions between ligands and CDK1 during molecular docking, induced fit docking and molecular dynamics simulation.

Compounds Hydrogen bonds π- π bonds
MD IFD MDS MDS
LZ9 Glu81, leu83 Ile10, Glu81, Leu83 Glu81, Leu83, Asp146 Tyr15
Spiraeoside Glu8, Ile10, Leu83, Ser84, Asp86 Glu8, Ile10, Lys33 Leu83, Ser84, Asp146
Robinetin Ile10, Leu83, Ser84, Asp86 Ile10, Lys33, Leu83, Asp86, Asp146 Thr14, Lys33, Val64, Glu81, Leu83, Arg158 Phe80
6_hydroxyluteolin Ile10, Glu81, Leu83, Ser84 Ile10, Lys33, Glu81, Leu83, Ser84 Thr14, Lys33, Glu51, Leu83, Arg158, Phe147
Quercetagetin Ile10, Glu81, leu83, asp86 Tyr15, Glu81,
Leu83, Gln132
Lys33, Glu51, Leu83

MD, molecular docking; IFD, induced fit docking; MDS, molecular dynamics simulation.