TABLE 1.
Primary cluster ID | No. Canadian plasmids | Median size (kb) | Predicted mobilitya,b | Replicon typea,b | Relaxase typea,b | MPF typea,b | No. genera | Core genes (%)d | blaKPC allelea | blaKPC frequency | Tn4401 varianta | Mean no. ARGs per plasmidc | Plasmid taxonomic unit (PTU)e |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AA002 | 62 | 75 | Conjugative | IncL/M | MOBP | MPF_I | 12 | 0.09 | blaKPC-3 | 0.34 | Tn4401b | 5.1 | L/M |
AA007 | 31 | 57.3 | Conjugative | IncN | MOBF | MPF_T | 15 | 0.06 | blaKPC-3 | 0.38 | Tn4401b | 6.1 | N1 |
AA013 | 10 | 43.6 | Mobilizable | Rep_cluster_1367 | MOBC | −f | 8 | 0.18 | blaKPC-2 | 0.86 | Tn4401b | 2.5 | E8 |
AA014 | 13 | 55.6 | Conjugative | IncN | MOBF | MPF_T | 4 | 0.28 | blaKPC-3 | 0.71 | Tn4401b | 1.4 | N2/3 |
AA017 | 7 | 47 | Conjugative | IncN | MOBF | MPF_T | 5 | 0.14 | blaKPC-2 | 0.18 | Tn4401b | 5 | N2/3 |
AA029 | 9 | 113.6 | Conjugative | IncFIB, IncFII, rep_cluster_2183 | MOBF, MOBF | MPF_F | 4 | 0.04 | blaKPC-2 | 0.86 | Tn4401a | 3.6 | FK |
AA042 | 21 | 16.5 | Mobilizable | ColRNAI_rep_cluster_1857 | MOBC | − | 7 | 0.03 | blaKPC-3 | 1 | Tn4401b | 1.7 | Could not be assigned |
AA085 | 185.7 | Conjugative | IncFIB, IncFII, rep_cluster_2183 | MOBF, MOBF | MPF_F | 1 | 0.06 | blaKPC-2 | 0.12 | Tn4401a | 5.9 | FK | |
AA109 | 7 | 97.9 | Non-mobilizable | Rep_cluster_2268 [novel repE(pEh60-7)] | − | MPF_F | 1 | 0.2 | blaKPC-3 | 0.78 | Tn4401b | 1 | Could not be assigned |
AA124 | 10 | 48.8 | Conjugative | IncX5 | MOBP | MPF_T | 9 | 0.13 | blaKPC-3 | 0.4 | Tn4401b | 1.6 | New (putative) PTU |
Values indicate the most common genotype in the cluster and may not apply to all plasmids in the cluster.
Values obtained from MOB-suite (24, 26). Mobility is assigned based on the presence of relaxase (mobilizable) and/or MPF proteins (conjugative) or absence of both (non-mobilizable).
ARGs = antimicrobial resistance genes.
Core genes represent the number of genes present in >95% of plasmids in the cluster, divided by the total number of non-redundant genes in the cluster.
PTU values obtained from COPLA (27) .
"-" indicates no relaxase or MPF protein detected.