Figure - PMC

Skip to main content

An official website of the United States government

Here's how you know

Here's how you know

Official websites use .gov
A .gov website belongs to an official government organization in the United States.

Secure .gov websites use HTTPS
A lock ( ) or https:// means you've safely connected to the .gov website. Share sensitive information only on official, secure websites.

View full-text article in PMC

. 2023 Dec 6;3(1):vbad179. doi: 10.1093/bioadv/vbad179

Search in PMC
Search in PubMed
View in NLM Catalog
Add to search

© The Author(s) 2023. Published by Oxford University Press.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

PMC Copyright notice

Figure 2. — escheR improves multidimensional embedding visualizations. The gene expression of POMGNT1 among peripheral blood mononuclear cells (Hansen et al., 2022) under the UMAP representation. (A) The schex R/Bioconductor package uses color-coded convex hulls to annotate data-driven cell types, creating confusion when interpreting hexagons in overlapping hulls. (B) escheR plots hexagon-specific membership to avoid substantial overlapping of cluster membership. Due to the binning strategy, cautions in interpretation are needed due to possible cluster intermixing within each hexagon.