KEY RESOURCES TABLE

REAGENT or RESOURCE	SOURCE	IDENTIFIER
Deposited Data
H. sapiens peripheral blood 10x v3 scRNA-seq data	178	pbmc_1k_v3
M. musculus heart 10x v3 scRNA-seq data	179	heart_1k_v3
M. musculus neuron 10x v3 scRNA-seq data	180	neuron_1k_v3
M. musculus cultured embryonic stem cells treated with DMSO 10x v2 scRNA-seq data	Desai et al.	desai_dmso
H. sapiens peripheral blood 10x v2 scRNA-seq data (technical replicate of pbmc_1k_v3)	181	pbmc_1k_v2
M. musculus neuron 10x v3 snRNA-seq data	182	brain_nuc_5k_v3
Supporting data for GP_2021_3	Gorin and Pachter	Zenodo: dataset 7388133
Software and Algorithms
Python	python.org	3.9.1
NumPy	numpy.org	1.22.1
SciPy	scipy.org	1.7.3
pandas	pandas.pydata.org	1.2.4
kallisto | bustools	Melsted and Booeshaghi et al.	0.26.0
Monod	Gorin and Pachter	2.5.0
Other
Count matrices for all datasets	This manuscript	Zenodo: dataset 8132976
Custom analysis notebooks	This manuscript	GitHub: https://github.com/pachterlab/GVP_2023 (version of record deposited at Zenodo: dataset 8132976)