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. 2023 Nov 29;9(2):vead070. doi: 10.1093/ve/vead070

Table 2.

Results from simulation scenarios 1–3. For Bayesian inference, rλ,3 was fixed to its true value (rλ,3 = 1.0) for all scenarios. For scenario 1, out of 100 simulation replicates, 84 yielded ESS > 200 for all estimated parameters. For scenario 2, all simulation replicates yielded ESS > 200 for all the parameters, whereas for scenario 3 in total 96 replicates yielded ESS > 200 for all estimated parameters.

Scenario Parameter Truth Median Relative error Relative bias Relative HPD width 95% HPD accuracy
1 Rbase 3.0 3.027 0.063 0.009 0.394 96
rλ,1 1.0 1.013 0.103 0.013 0.561 98
rλ,2 1.0 1.014 0.099 0.014 0.564 96
rλ,3 1.0 1.0 (fixed)
rλ,4 1.0 1.038 0.102 0.037 0.580 96
rλ,5 1.666 1.639 0.069 −0.016 0.421 99
s1 0.01 0.010 0.079 −0.035 1.137 100
s2 0.01 0.009 0.073 −0.045 1.126 100
s3 0.01 0.010 0.076 −0.030 1.137 100
s4 0.01 0.010 0.072 −0.036 1.135 100
s5 0.001 0.001 0.552 0.404 2.764 98
2 Rbase 3.0 3.061 0.080 0.020 0.402 97
rλ,1 1.0 0.997 0.109 −0.003 0.554 95
rλ,2 1.0 1.002 0.108 0.002 0.558 96
rλ,3 1.0 1.0 (fixed)
rλ,4 1.0 0.991 0.100 −0.009 0.550 95
rλ,5 1.666 1.574 0.107 −0.055 0.506 92
s1 0.01 0.010 0.072 −0.038 1.132 100
s2 0.01 0.010 0.083 −0.015 1.147 100
s3 0.01 0.010 0.072 −0.020 1.145 100
s4 0.01 0.010 0.065 −0.010 1.153 100
s5,1 0.0 0.0 (fixed)
s5,2 0.01 0.010 0.051 −0.022 1.172 100
3 Rbase 3.0 3.013 0.039 0.004 0.208 96
rλ,1 1.0 1.006 0.054 0.006 0.294 99
rλ,2 1.0 1.001 0.053 7e-04 0.293 96
rλ,3 1.0 1.0 (fixed)
rλ,4 1.0 1.008 0.057 0.008 0.295 97
rλ,5 1.666 1.630 0.050 −0.022 0.299 98
s1 0.01 0.01 0.108 −0.027 1.012 98
s2 0.01 0.01 0.115 −0.014 1.021 100
s3 0.01 0.01 0.112 −0.014 1.019 100
s4 0.01 0.01 0.117 −0.022 1.015 100
s5,1 0.0 0.0 (fixed)
s5,2 0.01 0.01 0.099 −0.030 1.093 100