Table 2.

Summary statistics for the genomic estimated breeding values (GEBVs) across different prediction models for quantitative traits in chile pepper

Trait		Whole marker dataset					LD-based marker dataset
	Genomic heritability (h2)	Mean	Std. dev	SE mean	Min	Max	Mean	Std. dev	SE mean	Min	Max
First pod date	0.26	29.69	29.04	0.83	-4.57	72.29	29.76	28.98	0.83	-5.07	70.54
Flowering time	0.28	27.59	27.22	0.78	-5.29	68.81	27.68	27.12	0.78	-5.29	66.93
Mature green yield	0.00	0.17	0.17	0.01	-5.85E-08	0.35	0.17	0.17	0.005	-0.0001	0.35
Mature red yield	0.10	0.26	0.25	0.01	-0.03	0.6	0.26	0.25	0.01	-0.04	0.6
Plant height	0.76	29.68	30.49	0.87	-29.01	95.66	29.35	30.69	0.88	-29.55	93.07
Plant width	0.31	30.81	30.31	0.87	-16.78	73.96	31.18	29.93	0.86	-16.26	72.66
Ten pod weight	0.80	0.19	0.24	0.01	-0.31	1.58	0.19	0.24	0.01	-0.29	1.56
Total yield per plant	0.10	0.43	0.4	0.01	-0.07	0.98	0.42	0.40	0.01	-0.08	0.96