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. 2023 Dec 19;14:8423. doi: 10.1038/s41467-023-44152-8

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© The Author(s) 2023

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 4 — a Relative abundance of top 10 clonotypes from single-cell TCR-Sequencing of Nur77-GFP^LO and Nur77-GFP^HI CD4 T cells sorted from the lungs of one Nur77-GFP mouse at four weeks post-infection. Samples sorted on live CD3⁺CD4⁺CD44⁺ Nur77-GFP^LO or Nur77-GFP^HI cells. Amino acid sequences represent TCR CDR3 regions expressed as “TCRα_TCRβ“. b Feature plots show the localization of three expanded TCR clonotypes on gene expression UMAPs from Nur77-GFP^LO and Nur77-GFP^HI CD4 T cells. c Scatter plot shows the prevalence of TCR clonotypes among Nur77-GFP^LO vs. Nur77-GFP^HI cells. Blue dots indicate expanded clonotypes. Circle size indicates total abundance of each expanded clonotype.