TABLE 1.
Characteristics of the complete S. flexneri genome assemblies
| Isolate characteristics | Assembly characteristics | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Isolate | Serotype | Phylogenetic groupa | No. of contigs | Genome size (Mb) | Overall GC % | Contig label | Contig description | Sequence length (bp) | GC % | Plasmid incompatibility types | GenBank accession no. |
| 2457T | 2a | PG3 | 5 | 5.05 | 50.76 | 2457T_1 | Chromosome | 4,643,553 | 50.92 | None | CP100044 |
| p2457T_221 | Virulence plasmid | 221,974 | 45.86 | IncFII(AY458016) | CP100045 | ||||||
| p2457T_165 | Plasmid | 165,691 | 45.70 | IncFIA(HI1), IncHI1A, IncHI1B(R27) | CP100046 | ||||||
| p2457T_9 | Plasmid | 9,532 | 45.06 | None | CP100047 | ||||||
| p2457T_8 | Plasmid | 8,219 | 52.79 | None | CP100048 | ||||||
| J17B | 3a | PG4 | 2 | 4.97 | 50.73 | J17B_1 | Chromosome | 4,709,683 | 50.98 | None | CP100042 |
| pJ17B_264 | Virulence plasmid | 264,790 | 46.22 | IncFII(AY458016) | CP100043 | ||||||
| CCH060 | 6 | None | 3 | 4.96 | 50.97 | CCH060_1 | Chromosome | 4,684,126 | 51.21 | None | CP099865 |
| pCCH060_195 | Virulence plasmid | 195,804 | 45.40 | IncFII(AY458016) | CP099866 | ||||||
| pCCH060_77 | Plasmid | 77,769 | 50.24 | IncI1Alpha(AP005147) | CP099867 | ||||||
a
As indicated by previous study (17).