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. 2023 Dec 13;624(7992):602–610. doi: 10.1038/s41586-023-06842-7

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© The Author(s) 2023

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

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Extended Data Fig. 4 — (a) Line plots show LOESS curves of the number of large indels (> 20 & <50 bp) and structural variants (≥ 50 bp) per 500 Kb fixed window relative to the distance to the nearest telomere, parsed by variant type (non-repetitive = teal, short tandem repeat = red, tandem repeat = blue & mobile element = purple). (b) Dot plots show the number of structural variants per 500 Kb fixed window, relative to the distance of the window to the nearest telomere, for acrocentric and metacentric autosomes. The vertical dashed lines indicate a distance of 5 MB from the telomere. (c) Bar chart shows the proportion of SVs that could be lifted (green) or not (orange) from T2T-chm13 to hg38. (d) Bar chart shows the proportion of SVs classified according to reciprocal overlap as high (>80%; pink), moderate (50-80%; brown), low (<50%; beige) or no overlap (purple) in comparison to reference databases (gnomAD, deCODE & HGSVCv4; see Fig. 2e), parsed by SV type.